Show or hide table columns
-
+
No interactions match this filter. Clear the search to see all results.
mfe Δ is the energy difference from the best reported interaction for the same query–target pair; in evaluation, the reference is the best supplied structure. It is not a free-energy change. Coordinates are inclusive and use your start indices. Table visibility does not change the selected CSV download columns.
diff --git a/gui/options.js b/gui/options.js
index 4e95bccf..8bc600ff 100644
--- a/gui/options.js
+++ b/gui/options.js
@@ -86,7 +86,8 @@ export const GROUPS = [
['noSeed'], ['seedTQ'], ['seedBP', 'seedMaxUP', 'seedQMaxUP', 'seedTMaxUP'],
['seedMaxE', 'seedMinPu', 'seedMaxEhybrid'], ['seedQRange', 'seedTRange'], ['seedNoGU', 'seedNoGUend'],
]) },
- { key: 'output-options', label: 'Output', fields: [...fields.values()].filter((field) => field.key.startsWith('out')) },
+ { key: 'output-options', label: 'Output', fields: [...fields.values()].filter((field) => field.key.startsWith('out') && field.key !== 'outCsvSort') },
+ { key: 'csv-options', label: 'CSV', fields: [fields.get('outCsvSort')] },
{ key: 'interaction-options', label: 'Model & Energy', rows: rows([
['model', 'mode'], ['energyVRNA', 'temperature', 'energyAdd'], ['energyNoDangles'],
['windowWidth', 'windowOverlap'], ['kineticScore'],
@@ -98,12 +99,20 @@ export const FIELDS = GROUPS.flatMap((group) => group.fields);
export const PARAMETER_DEFAULTS = Object.freeze(Object.fromEntries(FIELDS.map((field) => [field.key, field.value])));
export const UI_DEFAULTS = Object.freeze({ ...PARAMETER_DEFAULTS, outNumber: 10 });
export const EXTRA_OUTPUTS = [
- ['qMinE', 'Query minimum energies', true], ['tMinE', 'Target minimum energies', true],
- ['qAcc', 'Query opening energies'], ['tAcc', 'Target opening energies'],
- ['qPu', 'Query unpaired probabilities'], ['tPu', 'Target unpaired probabilities'],
- ['qSpotProb', 'Query interaction probabilities', true], ['tSpotProb', 'Target interaction probabilities', true],
- ['pMinE', 'Pair minimum energies', true], ['spotProb', 'Interaction spot probabilities', true],
- ['bpProb', 'Actual base-pair probabilities (model P)', true], ['bpsvg', 'Base-pair probability SVG (model P)', true],
- ['normal', 'ASCII interaction structures'], ['detailed', 'Detailed interaction report'], ['ensemble', 'Ensemble report'],
-].map(([key, label, predictionOnly = false]) => ({ key, label, prediction: predictionOnly }));
+ ['qMinE', 'Query minimum energies', true, 'CSV position profile of the lowest interaction energy covering each query nucleotide. Useful for locating favorable query sites.'],
+ ['tMinE', 'Target minimum energies', true, 'CSV position profile of the lowest interaction energy covering each target nucleotide. Useful for locating favorable target sites.'],
+ ['qAcc', 'Query opening energies', false, 'RNAplfold-style opening-energy matrix for the query. Use it to inspect or reproduce query accessibility.'],
+ ['tAcc', 'Target opening energies', false, 'RNAplfold-style opening-energy matrix for the target. Use it to inspect or reproduce target accessibility.'],
+ ['qPu', 'Query unpaired probabilities', false, 'RNAplfold-style query unpaired-probability matrix, converted from rounded opening energies.'],
+ ['tPu', 'Target unpaired probabilities', false, 'RNAplfold-style target unpaired-probability matrix, converted from rounded opening energies.'],
+ ['qSpotProb', 'Query interaction probabilities', true, 'CSV position profile estimating the probability that each query nucleotide is covered by an interaction.'],
+ ['tSpotProb', 'Target interaction probabilities', true, 'CSV position profile estimating the probability that each target nucleotide is covered by an interaction.'],
+ ['pMinE', 'Pair minimum energies', true, 'CSV target-by-query matrix of the minimum interaction energy covering each nucleotide pair. Useful as an energy heatmap.'],
+ ['spotProb', 'Interaction spot probabilities', true, 'CSV target-by-query matrix, or selected spots, estimating interaction coverage probabilities. Useful as a probability heatmap.'],
+ ['bpProb', 'Actual base-pair probabilities (model P)', true, 'CSV target-by-query matrix of actual base-pair probabilities for the model P interaction ensemble.'],
+ ['bpsvg', 'Base-pair probability SVG (model P)', true, 'SVG dot plot of model P base-pair probabilities with accessibility frames and seed/MFE outlines.'],
+ ['normal', 'ASCII interaction structures', false, 'Compact text report with ASCII interaction structures and their overall energies.'],
+ ['detailed', 'Detailed interaction report', false, 'Expanded text report with interaction structures, coordinates and energy contributions.'],
+ ['ensemble', 'Ensemble report', false, 'Text report of interaction and intramolecular ensemble energies and partition functions.'],
+].map(([key, label, predictionOnly, description]) => ({ key, label, prediction: predictionOnly, description }));
export const ENSEMBLE_COLUMNS = ['Eall', 'Zall', 'EallTotal', 'P_E'];
diff --git a/gui/output-visualization.js b/gui/output-visualization.js
new file mode 100644
index 00000000..9c901089
--- /dev/null
+++ b/gui/output-visualization.js
@@ -0,0 +1,230 @@
+const PROFILE_TYPES = new Map([
+ ['qMinE', { strand: 'query', value: 'minE', title: 'Minimum-energy profile', yTitle: 'Minimum interaction energy (kcal/mol)' }],
+ ['tMinE', { strand: 'target', value: 'minE', title: 'Minimum-energy profile', yTitle: 'Minimum interaction energy (kcal/mol)' }],
+ ['qSpotProb', { strand: 'query', value: 'spotProb', title: 'Interaction-probability profile', yTitle: 'Interaction probability' }],
+ ['tSpotProb', { strand: 'target', value: 'spotProb', title: 'Interaction-probability profile', yTitle: 'Interaction probability' }],
+]);
+const MATRIX_TYPES = new Map([
+ ['pMinE', { value: 'minE', title: 'Pair minimum energies', colorTitle: 'kcal/mol', colorscale: [[0, '#0f4676'], [0.5, '#8bbbd8'], [1, '#f8fbff']] }],
+ ['spotProb', { value: 'spotProb', title: 'Interaction spot probabilities', colorTitle: 'Probability', colorscale: [[0, '#f8fbff'], [0.5, '#80b6d8'], [1, '#145a96']] }],
+]);
+
+function outputType(name) {
+ const match = /^(qMinE|tMinE|qSpotProb|tSpotProb|pMinE|spotProb)(?:-t\d+q\d+)?\.csv$/.exec(name);
+ return match?.[1] ?? null;
+}
+
+function table(text) {
+ if (typeof text !== 'string' || !text.trim()) throw new Error('The output file is empty.');
+ const lines = text.trimEnd().split(/\r?\n/), header = lines.shift().split(';');
+ if (header.length < 2 || new Set(header).size !== header.length) throw new Error('The output file has an invalid header.');
+ const rows = lines.filter((line) => line.trim()).map((line) => {
+ const cells = line.split(';');
+ if (cells.length !== header.length) throw new Error('The output file contains a malformed row.');
+ return cells;
+ });
+ if (!rows.length) throw new Error('The output file contains no values to plot.');
+ return { header, rows };
+}
+
+function number(value) {
+ if (/^(NA|NAN)$/i.test(value.trim())) return null;
+ const parsed = Number(value);
+ if (!Number.isFinite(parsed)) throw new Error(`The output contains a non-numeric value: ${value}`);
+ return parsed;
+}
+
+function plotText(value) {
+ return String(value).replaceAll('&', '&').replaceAll('<', '<').replaceAll('>', '>');
+}
+
+function record(request, strand, index) {
+ return request?.[strand]?.records?.[index - 1]?.id ?? '';
+}
+
+export function outputFileContext(name, request) {
+ const type = outputType(name) ?? /^(qAcc|tAcc|qPu|tPu|bpProb|bpsvg)/.exec(name)?.[1] ?? '';
+ const pair = /-t(\d+)q(\d+)(?=\.[^.]+$)/.exec(name);
+ if (pair) {
+ const target = record(request, 'target', Number(pair[1])), query = record(request, 'query', Number(pair[2]));
+ return { target, query, label: [target, query].filter(Boolean).join(' : ') };
+ }
+ const single = /-s(\d+)(?=\.[^.]+$)/.exec(name);
+ if (single && /^[qt](Acc|Pu)/.test(type)) {
+ const strand = type.startsWith('q') ? 'query' : 'target', value = record(request, strand, Number(single[1]));
+ return { [strand]: value, label: value };
+ }
+ const target = request?.target?.records?.length === 1 ? request.target.records[0].id : '';
+ const query = request?.query?.records?.length === 1 ? request.query.records[0].id : '';
+ if (/^[qt](Acc|Pu)$/.test(type)) {
+ const value = type.startsWith('q') ? query : target;
+ return { [type.startsWith('q') ? 'query' : 'target']: value, label: value };
+ }
+ return { target, query, label: [target, query].filter(Boolean).join(' : ') };
+}
+
+function baseLayout(title) {
+ return {
+ title: { text: title, x: 0.04, xanchor: 'left', font: { size: 17 } },
+ autosize: true,
+ height: 420,
+ margin: { l: 72, r: 28, t: 62, b: 78 },
+ paper_bgcolor: 'rgba(0,0,0,0)',
+ plot_bgcolor: '#fff',
+ font: { family: 'Segoe UI, Tahoma, Geneva, sans-serif', color: '#1c2b39', size: 12 },
+ };
+}
+
+function categoricalAxis(title, values) {
+ return { title: { text: title }, type: 'category', categoryorder: 'array', categoryarray: values, automargin: true, gridcolor: '#e0e8f0' };
+}
+
+export function outputVisualization(file, request) {
+ const type = outputType(file.name);
+ if (!type) return null;
+ const parsed = table(file.text), context = outputFileContext(file.name, request);
+ if (PROFILE_TYPES.has(type)) {
+ const profile = PROFILE_TYPES.get(type);
+ if (parsed.header.length !== 3 || parsed.header[0] !== 'idx' || parsed.header[2] !== profile.value) throw new Error(`Unexpected ${type} profile columns.`);
+ const x = parsed.rows.map((row) => String(row[0])), y = parsed.rows.map((row) => number(row[2]));
+ const sequence = parsed.header[1] || context[profile.strand] || (profile.strand === 'query' ? 'Query' : 'Target');
+ return {
+ kind: 'profile', context,
+ traces: [{
+ type: 'scatter', mode: 'lines+markers', x, y, text: parsed.rows.map((row) => row[1]),
+ name: plotText(sequence), line: { color: '#145a96', width: 2 }, marker: { color: '#145a96', size: 6 },
+ connectgaps: false, hovertemplate: 'Index %{x}
Nucleotide %{text}
Value %{y}',
+ }],
+ layout: {
+ ...baseLayout(`${profile.title}: ${plotText(sequence)}`),
+ xaxis: categoricalAxis(`${profile.strand === 'query' ? 'Query' : 'Target'} index`, x),
+ yaxis: { title: { text: profile.yTitle }, automargin: true, gridcolor: '#e0e8f0', rangemode: profile.value === 'spotProb' ? 'tozero' : 'normal' },
+ },
+ };
+ }
+
+ const matrix = MATRIX_TYPES.get(type);
+ if (type === 'spotProb' && parsed.header[0] === 'spot') {
+ if (parsed.header.length !== 2 || parsed.header[1] !== 'probability') throw new Error('Unexpected selected-spot probability columns.');
+ const x = parsed.rows.map((row) => String(row[0])), y = parsed.rows.map((row) => number(row[1]));
+ return {
+ kind: 'spots', context,
+ traces: [{ type: 'bar', x, y, marker: { color: '#145a96' }, hovertemplate: 'Spot %{x}
Probability %{y}' }],
+ layout: {
+ ...baseLayout(`${matrix.title}${context.label ? `: ${plotText(context.label)}` : ''}`),
+ xaxis: categoricalAxis('Target & query index', x),
+ yaxis: { title: { text: matrix.colorTitle }, automargin: true, gridcolor: '#e0e8f0', rangemode: 'tozero' },
+ },
+ };
+ }
+ if (parsed.header[0] !== matrix.value || parsed.header.length < 2) throw new Error(`Unexpected ${type} matrix columns.`);
+ const x = parsed.header.slice(1).map(String), y = parsed.rows.map((row) => String(row[0]));
+ const z = parsed.rows.map((row) => row.slice(1).map(number));
+ const target = context.target || 'Target', query = context.query || 'Query';
+ return {
+ kind: 'matrix', context,
+ traces: [{
+ type: 'heatmap', x, y, z, colorscale: matrix.colorscale, hoverongaps: false,
+ colorbar: { title: { text: matrix.colorTitle, side: 'right' } },
+ hovertemplate: `${plotText(target)} %{y}
${plotText(query)} %{x}
Value %{z}`,
+ }],
+ layout: {
+ ...baseLayout(`${matrix.title}: ${plotText(target)} : ${plotText(query)}`),
+ xaxis: categoricalAxis(`${plotText(query)} index`, x),
+ yaxis: categoricalAxis(`${plotText(target)} index`, y),
+ },
+ };
+}
+
+function button(text, className = '') {
+ const node = document.createElement('button'); node.type = 'button'; node.textContent = text; node.className = className; return node;
+}
+
+export class AdditionalOutputView {
+ constructor(file, request, id, download) {
+ this.file = file; this.id = id; this.root = document.createElement('details'); this.root.className = 'output-file';
+ const summary = document.createElement('summary'); summary.className = 'output-file-summary';
+ const name = document.createElement('span'); name.className = 'output-file-name'; name.textContent = file.name;
+ const downloadButton = button('Download', 'text-button output-download');
+ downloadButton.setAttribute('aria-label', `Download ${file.name}`);
+ downloadButton.addEventListener('click', (event) => { event.preventDefault(); event.stopPropagation(); download(); });
+ const context = outputFileContext(file.name, request), description = document.createElement('span');
+ description.className = 'output-file-context'; description.textContent = context.label ? `— ${context.label}` : '';
+ summary.append(name, downloadButton, description); this.root.append(summary);
+
+ const body = document.createElement('div'); body.className = 'output-file-body'; this.root.append(body);
+ const preview = document.createElement('pre'); preview.textContent = file.text.slice(0, 100000);
+ const contentPanel = document.createElement('section'); contentPanel.className = 'output-tab-panel'; contentPanel.append(preview);
+ if (file.text.length > 100000) {
+ const note = document.createElement('p'); note.textContent = 'Preview limited to 100,000 characters. Download contains the complete file.'; contentPanel.append(note);
+ }
+
+ let spec = null, plotError = null;
+ try { spec = outputVisualization(file, request); } catch (error) { plotError = error; }
+ if (!spec && !plotError) { body.append(contentPanel); return; }
+
+ const tabs = document.createElement('div'); tabs.className = 'output-tabs'; tabs.setAttribute('role', 'tablist'); tabs.setAttribute('aria-label', `${file.name} views`);
+ const visualizationTab = button('Visualization', 'output-tab'), contentTab = button('File Content', 'output-tab');
+ const visualizationPanel = document.createElement('section'); visualizationPanel.className = 'output-tab-panel';
+ visualizationTab.id = `${id}-visualization-tab`; visualizationPanel.id = `${id}-visualization-panel`;
+ contentTab.id = `${id}-content-tab`; contentPanel.id = `${id}-content-panel`;
+ for (const [tab, panel] of [[visualizationTab, visualizationPanel], [contentTab, contentPanel]]) {
+ tab.setAttribute('role', 'tab'); tab.setAttribute('aria-controls', panel.id);
+ panel.setAttribute('role', 'tabpanel'); panel.setAttribute('aria-labelledby', tab.id);
+ }
+ tabs.append(visualizationTab, contentTab); body.append(tabs, visualizationPanel, contentPanel);
+ this.tabs = [visualizationTab, contentTab]; this.panels = [visualizationPanel, contentPanel];
+ this.selectTab = (index, focus = false) => {
+ this.tabs.forEach((tab, current) => { tab.setAttribute('aria-selected', String(current === index)); tab.tabIndex = current === index ? 0 : -1; this.panels[current].hidden = current !== index; });
+ if (focus) this.tabs[index].focus();
+ if (index === 0) this.render();
+ };
+ visualizationTab.addEventListener('click', () => this.selectTab(0)); contentTab.addEventListener('click', () => this.selectTab(1));
+ tabs.addEventListener('keydown', (event) => {
+ if (!['ArrowLeft', 'ArrowRight', 'Home', 'End'].includes(event.key)) return;
+ const current = this.tabs.indexOf(document.activeElement);
+ const next = event.key === 'Home' ? 0 : event.key === 'End' ? 1 : (current + (event.key === 'ArrowRight' ? 1 : -1) + 2) % 2;
+ event.preventDefault(); this.selectTab(next, true);
+ });
+
+ const tools = document.createElement('div'); tools.className = 'plot-tools';
+ const status = document.createElement('p'); status.className = 'output-plot-status'; status.setAttribute('role', 'status');
+ visualizationPanel.append(tools, status); this.status = status;
+ if (plotError) { status.textContent = `Visualization unavailable: ${plotError.message}`; this.selectTab(0); return; }
+ const exportButton = button('Export PNG', 'secondary'); exportButton.disabled = true;
+ exportButton.addEventListener('click', async () => {
+ try {
+ await this.ready;
+ const image = await globalThis.Plotly.toImage(this.plot, { format: 'png', width: 1400, height: 850 });
+ const encoded = image.slice(image.indexOf(',') + 1), bytes = Uint8Array.from(atob(encoded), (character) => character.charCodeAt(0));
+ const url = URL.createObjectURL(new Blob([bytes], { type: 'image/png' }));
+ const link = document.createElement('a'); link.href = url; link.download = file.name.replace(/\.csv$/i, '.png');
+ document.body.append(link); link.click(); link.remove(); setTimeout(() => URL.revokeObjectURL(url), 1000);
+ } catch (error) { status.textContent = `PNG export failed: ${error.message}`; }
+ });
+ tools.append(exportButton); this.exportButton = exportButton;
+ this.plot = document.createElement('div'); this.plot.className = 'output-plot'; visualizationPanel.append(this.plot); this.spec = spec;
+ this.root.addEventListener('toggle', () => { if (this.root.open && !visualizationPanel.hidden) this.render(); });
+ this.selectTab(0);
+ }
+
+ render() {
+ if (!this.spec || this.rendered || !this.root.open) return;
+ if (!globalThis.Plotly?.newPlot) { this.status.textContent = 'Visualization unavailable: Plotly did not load.'; return; }
+ this.rendered = true; this.status.textContent = 'Rendering visualization…'; this.plot.setAttribute('aria-busy', 'true');
+ this.ready = Promise.resolve(globalThis.Plotly.newPlot(this.plot, this.spec.traces, this.spec.layout, {
+ responsive: true, displaylogo: false, scrollZoom: false,
+ modeBarButtonsToRemove: ['sendDataToCloud', 'lasso2d', 'select2d'],
+ })).then(() => {
+ this.plot.removeAttribute('aria-busy'); this.status.textContent = ''; this.exportButton.disabled = false;
+ }).catch((error) => { this.plot.removeAttribute('aria-busy'); this.status.textContent = `Visualization unavailable: ${error.message}`; });
+ }
+
+ resize() {
+ if (this.rendered && this.root.open && !this.panels?.[0].hidden) requestAnimationFrame(() => globalThis.Plotly?.Plots?.resize(this.plot));
+ }
+
+ destroy() {
+ if (this.rendered) globalThis.Plotly?.purge?.(this.plot);
+ }
+}
diff --git a/gui/sessions.js b/gui/sessions.js
index 71b712d0..ed3c873a 100644
--- a/gui/sessions.js
+++ b/gui/sessions.js
@@ -1,6 +1,7 @@
import { ResultsView, downloadBlob } from './results.js';
import { serializeParameters, importParameters } from './parameter-file.js';
import { zipFiles } from './archive.js';
+import { AdditionalOutputView } from './output-visualization.js';
// Sessions live only in this page. Each owns a JSON snapshot and its own view;
// editing the form or exploring another session cannot change an earlier run.
@@ -25,7 +26,10 @@ export class SessionsView {
// Unload third-party viewers while folded. The table selection is retained
// and can be visualized again without recomputing the prediction.
if (!expanded) session.view.visualization.clear();
- else if (session.view.selected) session.view.visualization.show(session.view.selected, session.view.request);
+ else {
+ if (session.view.selected) session.view.visualization.show(session.view.selected, session.view.request);
+ for (const fileView of session.fileViews) fileView.resize();
+ }
}
select(session, restore = true) {
@@ -46,7 +50,7 @@ export class SessionsView {
const id = `session-${this.nextNumber}`, task = request.task === 'evaluation' ? 'Evaluation' : 'Prediction';
const session = {
id, name: `${task} ${this.nextNumber}`, parameterJson, root,
- panel: find('panel'), toggle: find('toggle'), view: new ResultsView(find('results-view')),
+ panel: find('panel'), toggle: find('toggle'), view: new ResultsView(find('results-view')), fileViews: [],
};
const count = session.view.show(result.csv, result.csvColumns, request);
const summary = count ? `${task} complete: ${count} interaction${count === 1 ? '' : 's'}.` : request.task === 'prediction' && request.parameters.outNumber === 0 ? 'Accessibility computation complete. No interaction rows requested.' : 'No favorable interactions found with these sequences and settings.';
@@ -94,16 +98,11 @@ export class SessionsView {
downloadBlob(`${filename}.zip`, new Blob([zipFiles(files)], { type: 'application/zip' }));
} catch (error) { this.reportError(new Error(`ZIP download failed: ${error.message}`)); }
});
- for (const file of result.files) {
- const details = document.createElement('details'), label = document.createElement('summary'); label.textContent = file.name;
- const preview = document.createElement('pre'); preview.textContent = file.text.slice(0, 100000);
- const download = document.createElement('button'); download.type = 'button'; download.className = 'secondary'; download.textContent = 'Download file';
- download.addEventListener('click', () => downloadBlob(file.name, new Blob([file.text], { type: 'text/plain;charset=utf-8' })));
- details.append(label, download, preview);
- if (file.text.length > 100000) {
- const note = document.createElement('p'); note.textContent = 'Preview limited to 100,000 characters. Download contains the complete file.'; details.append(note);
- }
- find('file-list').append(details);
+ for (const [index, file] of result.files.entries()) {
+ const fileView = new AdditionalOutputView(file, request, `${id}-file-${index}`, () => {
+ downloadBlob(file.name, new Blob([file.text], { type: 'text/plain;charset=utf-8' }));
+ });
+ session.fileViews.push(fileView); find('file-list').append(fileView.root);
}
find('output-files').hidden = !result.files.length;
find('diagnostic-text').textContent = result.diagnostics; find('diagnostics').hidden = !result.diagnostics;
@@ -111,7 +110,9 @@ export class SessionsView {
find('delete').addEventListener('click', () => {
const entries = [...this.entries.values()], index = entries.indexOf(session);
const next = entries[index + 1] ?? entries[index - 1];
- session.view.clear(); root.remove(); this.entries.delete(id);
+ session.view.clear();
+ for (const fileView of session.fileViews) fileView.destroy();
+ root.remove(); this.entries.delete(id);
// Deleting output does not silently overwrite an edited form.
if (this.selected === id) this.selected = null;
this.announce(`${session.name} deleted. ${this.entries.size} session${this.entries.size === 1 ? '' : 's'} remaining.`);
diff --git a/gui/styles.css b/gui/styles.css
index 360ba4c4..f2daae69 100644
--- a/gui/styles.css
+++ b/gui/styles.css
@@ -281,24 +281,36 @@ fieldset {
.field-grid {
display:grid;
- grid-template-columns:repeat(auto-fill,minmax(220px,1fr));
- gap:20px 24px;
- align-items:start;
- margin-bottom:20px;
+ grid-template-columns:repeat(auto-fit,minmax(10rem,14rem));
+ gap:12px 16px;
+ align-items:end;
+ justify-content:start;
+ margin-bottom:12px;
}
/* Explicit rows preserve the requested grouping; subgrid aligns inputs below
- labels of different heights without fixing a font-dependent label height. */
-.field-grid.columns-1 { grid-template-columns:minmax(0,1fr); }
-.field-grid.columns-2 { grid-template-columns:repeat(2,minmax(0,1fr)); }
-.field-grid.columns-3 { grid-template-columns:repeat(3,minmax(0,1fr)); }
-.field-grid.columns-4 { grid-template-columns:repeat(4,minmax(0,1fr)); }
-.field-grid.columns-5 { grid-template-columns:repeat(5,minmax(0,1fr)); }
+ labels of different heights without fixing a font-dependent label height.
+ Bounded tracks keep short rows left-aligned instead of stretching controls
+ across the complete panel. */
+.field-grid.columns-1 { grid-template-columns:minmax(10rem,38rem); }
+.field-grid.columns-2 { grid-template-columns:repeat(2,minmax(10rem,18rem)); }
+.field-grid.columns-3 { grid-template-columns:repeat(3,minmax(9rem,14rem)); }
+.field-grid.columns-4 { grid-template-columns:repeat(4,minmax(8.5rem,12rem)); }
+.field-grid.columns-5 { grid-template-columns:repeat(5,minmax(8rem,11rem)); }
.field-grid > .field:not(.check) { display:grid; grid-row:span 4; grid-template-rows:subgrid; row-gap:5px; }
+.field-grid > .field:not(.check) > label { align-self:end; }
.field-grid > .field:not(.check) > :nth-child(2) { align-self:start; }
-.accessibility-columns { display:grid; grid-template-columns:repeat(2,minmax(0,1fr)); gap:24px; margin-top:20px; }
+.accessibility-columns { display:grid; grid-template-columns:repeat(2,minmax(16rem,32rem)); gap:16px; justify-content:start; margin-top:12px; }
.accessibility-columns > div { min-width:0; }
-.seed-mode { max-width:24rem; margin-bottom:20px; }
+.seed-primary-row {
+ display:grid;
+ grid-template-columns:minmax(10rem,12rem) minmax(12rem,24rem);
+ gap:12px 16px;
+ align-items:start;
+ margin-bottom:12px;
+}
+.seed-primary-row .field { min-width:0; }
+#csv-options .field-grid.columns-1 { grid-template-columns:minmax(10rem,19rem); }
.field-grid:has(#noSeed) { display:none; }
#query,#target { white-space:pre; overflow:auto; }
#sequence-help,#general-options p { max-width:none; }
@@ -459,6 +471,7 @@ fieldset {
.table-scroll {
width:100%;
+ max-height:500px;
overflow:auto;
border:1px solid var(--border);
}
@@ -474,6 +487,9 @@ th {
background:var(--table-header);
text-align:left;
padding:0 5px;
+ position:sticky;
+ top:0;
+ z-index:1;
}
th button {
@@ -569,6 +585,102 @@ tbody tr.selected { background:var(--table-selection); }
padding-top:12px;
}
+.output-file-summary {
+ display:flex;
+ align-items:center;
+ flex-wrap:wrap;
+ gap:6px 10px;
+ min-height:2.2rem;
+ color:var(--brand-blue-dark);
+ font-weight:600;
+ list-style:none;
+}
+
+.output-file-summary::before {
+ content:'▸';
+ width:.8rem;
+}
+
+.output-file[open] > .output-file-summary::before {
+ content:'▾';
+}
+
+.output-file-name {
+ overflow-wrap:anywhere;
+}
+
+.output-file-context {
+ color:var(--muted);
+ font-size:.85rem;
+ font-weight:400;
+}
+
+.output-download {
+ padding:.1rem .35rem;
+}
+
+.output-file-body {
+ padding:.8rem 0 .25rem 1.15rem;
+}
+
+.output-tabs {
+ display:flex;
+ gap:4px;
+ padding:8px;
+ border-bottom:1px solid var(--border);
+ border-radius:5px 5px 0 0;
+ background:var(--brand-blue-soft);
+}
+
+.output-tab {
+ border:1px solid transparent;
+ border-radius:5px;
+ padding:.55rem .75rem;
+ color:var(--brand-blue-dark);
+ background:transparent;
+}
+
+.output-tab[aria-selected=true] {
+ border-color:var(--brand-blue);
+ background:var(--brand-blue);
+ color:white;
+}
+
+.output-tab:hover {
+ border-color:var(--brand-blue);
+}
+
+.output-tab-panel {
+ padding-top:12px;
+ min-width:0;
+}
+
+.plot-tools {
+ display:flex;
+ justify-content:flex-end;
+ min-height:2.6rem;
+}
+
+.plot-tools button {
+ font-size:.85rem;
+ padding:.35rem .7rem;
+}
+
+.output-plot {
+ width:100%;
+ min-height:420px;
+}
+
+.output-plot-status {
+ max-width:none;
+ color:var(--muted);
+ font-size:.85rem;
+}
+
+.output-tab-panel pre {
+ margin:0;
+}
+
pre {
white-space:pre;
overflow:auto;
@@ -698,6 +810,8 @@ dialog::backdrop {
grid-template-columns:repeat(auto-fill,minmax(min(100%,220px),1fr));
}
.field-grid[class*=columns-],.accessibility-columns { grid-template-columns:1fr; }
+ .seed-primary-row { grid-template-columns:1fr; }
+ #csv-options .field-grid.columns-1 { grid-template-columns:1fr; }
.results {
padding:14px;
}
@@ -713,6 +827,9 @@ dialog::backdrop {
.group-body {
padding:14px;
}
+ .output-file-body {
+ padding-left:0;
+ }
}
@media(prefers-reduced-motion:reduce) {
diff --git a/gui/tests/output-visualization.test.mjs b/gui/tests/output-visualization.test.mjs
new file mode 100644
index 00000000..d8aa08f8
--- /dev/null
+++ b/gui/tests/output-visualization.test.mjs
@@ -0,0 +1,63 @@
+import { test } from 'node:test';
+import assert from 'node:assert/strict';
+import { outputFileContext, outputVisualization } from '../output-visualization.js';
+
+const request = {
+ target: { records: [{ id: 'target-1' }, { id: 'target-2' }] },
+ query: { records: [{ id: 'query-1' }, { id: 'query-2' }] },
+};
+
+test('profile plots retain signed categorical indices and sequence names', () => {
+ const spec = outputVisualization({
+ name: 'qMinE-t1q2.csv',
+ text: 'idx;query-2;minE\n-2;G;-3.2\n-1;C;NA\n1;A;-2.1\n',
+ }, request);
+ assert.equal(spec.kind, 'profile');
+ assert.deepEqual(spec.traces[0].x, ['-2', '-1', '1']);
+ assert.deepEqual(spec.traces[0].y, [-3.2, null, -2.1]);
+ assert.equal(spec.layout.xaxis.type, 'category');
+ assert.deepEqual(spec.layout.xaxis.categoryarray, ['-2', '-1', '1']);
+ assert.match(spec.layout.title.text, /query-2/);
+ assert.equal(spec.context.label, 'target-1 : query-2');
+});
+
+test('pair energy and probability matrices use literal category axes', () => {
+ const energy = outputVisualization({
+ name: 'pMinE-t2q1.csv',
+ text: 'minE;A_-1;C_1\nG_5;-4.2;NA\nU_6;-2.0;-1.5\n',
+ }, request);
+ assert.equal(energy.kind, 'matrix');
+ assert.deepEqual(energy.traces[0].z, [[-4.2, null], [-2, -1.5]]);
+ assert.equal(energy.layout.xaxis.type, 'category');
+ assert.equal(energy.layout.yaxis.type, 'category');
+ assert.match(energy.layout.title.text, /target-2 : query-1/);
+
+ const spots = outputVisualization({
+ name: 'spotProb-t1q2.csv',
+ text: 'spotProb;A_-1;C_1\nG_5;0.1;0.2\n',
+ }, request);
+ assert.equal(spots.kind, 'matrix');
+ assert.equal(spots.traces[0].type, 'heatmap');
+ assert.deepEqual(spots.layout.xaxis.categoryarray, ['A_-1', 'C_1']);
+});
+
+test('selected spot probabilities use a categorical bar plot', () => {
+ const onePair = { target: { records: [{ id: 'target' }] }, query: { records: [{ id: 'query' }] } };
+ const spec = outputVisualization({ name: 'spotProb.csv', text: 'spot;probability\n0&0;0.4\n5&-2;0.6\n' }, onePair);
+ assert.equal(spec.kind, 'spots');
+ assert.equal(spec.traces[0].type, 'bar');
+ assert.deepEqual(spec.traces[0].x, ['0&0', '5&-2']);
+ assert.equal(spec.context.label, 'target : query');
+});
+
+test('output headers identify the sequence or sequence pair they cover', () => {
+ assert.equal(outputFileContext('tMinE-t2q1.csv', request).label, 'target-2 : query-1');
+ assert.equal(outputFileContext('qAcc-s2.csv', request).label, 'query-2');
+ assert.equal(outputFileContext('intarna-detailed.txt', request).label, '');
+});
+
+test('non-plot files are ignored and malformed plot data fails clearly', () => {
+ assert.equal(outputVisualization({ name: 'qAcc.csv', text: '# accessibility' }, request), null);
+ assert.throws(() => outputVisualization({ name: 'qMinE-t1q1.csv', text: 'idx;query-1;wrong\n1;A;2\n' }, request), /Unexpected qMinE/);
+ assert.throws(() => outputVisualization({ name: 'pMinE-t1q1.csv', text: 'minE;A_1\nG_1;not-a-number\n' }, request), /non-numeric/);
+});
diff --git a/gui/vendor/README.md b/gui/vendor/README.md
new file mode 100644
index 00000000..1789b6db
--- /dev/null
+++ b/gui/vendor/README.md
@@ -0,0 +1,16 @@
+# Plotly browser bundle
+
+`plotly-cartesian.min.js` is the unmodified browser bundle from
+`plotly.js-cartesian-dist-min` 4.1.2 (MIT). It provides the scatter, bar and
+heatmap traces used for additional IntaRNA output visualizations.
+`plotly.css` is a static copy of its runtime plot/modebar rules. Plotly normally
+inserts those rules with CSSOM; the bundle's supported `no-inline-styles` sentinel
+suppresses that insertion while the same-origin copy retains the GUI's strict
+`style-src 'self'` content-security policy.
+
+- npm integrity: `sha512-3UkyAT7/U8f3sOLavLnUjA6mqFmnqEe246GZhxT0J3TT9oZ0mh6SgwsL1yo/3/4xfmRSDFdGOxe+EsvT2XiE0g==`
+- bundle SHA-256: `aaf12ff1d4671f7e93f6df4291651ab4ca6b76c0ea5f1576ec1030e3c2819a20`
+- static CSS SHA-256: `3bcf2679b557067d8a3492b74092e946544d1cb8b2a72f278bcba95df59afd33`
+- source:
+
+Keep the adjacent `plotly-LICENSE.txt` when updating the bundle.
diff --git a/gui/vendor/plotly-LICENSE.txt b/gui/vendor/plotly-LICENSE.txt
new file mode 100644
index 00000000..13ffac3c
--- /dev/null
+++ b/gui/vendor/plotly-LICENSE.txt
@@ -0,0 +1,21 @@
+MIT License
+
+Copyright (c) 2016-2024 Plotly Technologies Inc.
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in
+all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+THE SOFTWARE.
diff --git a/gui/vendor/plotly-cartesian.min.js b/gui/vendor/plotly-cartesian.min.js
new file mode 100644
index 00000000..11ced8ef
--- /dev/null
+++ b/gui/vendor/plotly-cartesian.min.js
@@ -0,0 +1,149 @@
+/**
+* plotly.js (cartesian - minified) v4.1.2
+* Copyright 2012-2026, Plotly, Inc.
+* All rights reserved.
+* Licensed under the MIT license
+*/
+(
+ function(root, factory) {
+ if (typeof module === "object" && module.exports) {
+ module.exports = factory();
+ } else {
+ root.moduleName = factory();
+ }
+} (typeof self !== "undefined" ? self : this, () => {
+"use strict";var Plotly=(()=>{var jce=Object.create;var $v=Object.defineProperty,Wce=Object.defineProperties,Xce=Object.getOwnPropertyDescriptor,Zce=Object.getOwnPropertyDescriptors,$ce=Object.getOwnPropertyNames,F1=Object.getOwnPropertySymbols,Jce=Object.getPrototypeOf,s5=Object.prototype.hasOwnProperty,zS=Object.prototype.propertyIsEnumerable;var FS=(e,r,t)=>r in e?$v(e,r,{enumerable:!0,configurable:!0,writable:!0,value:t}):e[r]=t,At=(e,r)=>{for(var t in r||(r={}))s5.call(r,t)&&FS(e,t,r[t]);if(F1)for(var t of F1(r))zS.call(r,t)&&FS(e,t,r[t]);return e},Vt=(e,r)=>Wce(e,Zce(r));var NS=(e,r)=>{var t={};for(var a in e)s5.call(e,a)&&r.indexOf(a)<0&&(t[a]=e[a]);if(e!=null&&F1)for(var a of F1(e))r.indexOf(a)<0&&zS.call(e,a)&&(t[a]=e[a]);return t};var St=(e,r,t)=>()=>{if(t)throw t[0];try{return e&&(r=e(e=0)),r}catch(a){throw t=[a],a}};var z=(e,r)=>()=>{try{return r||e((r={exports:{}}).exports,r),r.exports}catch(t){throw r=0,t}},qt=(e,r)=>{for(var t in 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bpe(e,r){if(e===r){var t=r[1],a=r[2],n=r[3],i=r[6],o=r[7],l=r[11];e[1]=r[4],e[2]=r[8],e[3]=r[12],e[4]=t,e[6]=r[9],e[7]=r[13],e[8]=a,e[9]=i,e[11]=r[14],e[12]=n,e[13]=o,e[14]=l}else e[0]=r[0],e[1]=r[4],e[2]=r[8],e[3]=r[12],e[4]=r[1],e[5]=r[5],e[6]=r[9],e[7]=r[13],e[8]=r[2],e[9]=r[6],e[10]=r[10],e[11]=r[14],e[12]=r[3],e[13]=r[7],e[14]=r[11],e[15]=r[15];return e}});var WC=z((Xje,jC)=>{jC.exports=xpe;function xpe(e,r){var t=r[0],a=r[1],n=r[2],i=r[3],o=r[4],l=r[5],s=r[6],u=r[7],f=r[8],c=r[9],v=r[10],d=r[11],p=r[12],y=r[13],m=r[14],b=r[15],A=t*l-a*o,w=t*s-n*o,x=t*u-i*o,_=a*s-n*l,k=a*u-i*l,T=n*u-i*s,q=f*y-c*p,C=f*m-v*p,E=f*b-d*p,P=c*m-v*y,R=c*b-d*y,N=v*b-d*m,I=A*N-w*R+x*P+_*E-k*C+T*q;return 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e[0]=l*(v*b-d*m)-c*(s*b-u*m)+y*(s*d-u*v),e[1]=-(a*(v*b-d*m)-c*(n*b-i*m)+y*(n*d-i*v)),e[2]=a*(s*b-u*m)-l*(n*b-i*m)+y*(n*u-i*s),e[3]=-(a*(s*d-u*v)-l*(n*d-i*v)+c*(n*u-i*s)),e[4]=-(o*(v*b-d*m)-f*(s*b-u*m)+p*(s*d-u*v)),e[5]=t*(v*b-d*m)-f*(n*b-i*m)+p*(n*d-i*v),e[6]=-(t*(s*b-u*m)-o*(n*b-i*m)+p*(n*u-i*s)),e[7]=t*(s*d-u*v)-o*(n*d-i*v)+f*(n*u-i*s),e[8]=o*(c*b-d*y)-f*(l*b-u*y)+p*(l*d-u*c),e[9]=-(t*(c*b-d*y)-f*(a*b-i*y)+p*(a*d-i*c)),e[10]=t*(l*b-u*y)-o*(a*b-i*y)+p*(a*u-i*l),e[11]=-(t*(l*d-u*c)-o*(a*d-i*c)+f*(a*u-i*l)),e[12]=-(o*(c*m-v*y)-f*(l*m-s*y)+p*(l*v-s*c)),e[13]=t*(c*m-v*y)-f*(a*m-n*y)+p*(a*v-n*c),e[14]=-(t*(l*m-s*y)-o*(a*m-n*y)+p*(a*s-n*l)),e[15]=t*(l*v-s*c)-o*(a*v-n*c)+f*(a*s-n*l),e}});var JC=z(($je,$C)=>{$C.exports=wpe;function wpe(e){var r=e[0],t=e[1],a=e[2],n=e[3],i=e[4],o=e[5],l=e[6],s=e[7],u=e[8],f=e[9],c=e[10],v=e[11],d=e[12],p=e[13],y=e[14],m=e[15],b=r*o-t*i,A=r*l-a*i,w=r*s-n*i,x=t*l-a*o,_=t*s-n*o,k=a*s-n*l,T=u*p-f*d,q=u*y-c*d,C=u*m-v*d,E=f*y-c*p,P=f*m-v*p,R=c*m-v*y;return b*R-A*P+w*E+x*C-_*q+k*T}});var QC=z((Jje,KC)=>{KC.exports=Ape;function Ape(e,r,t){var a=r[0],n=r[1],i=r[2],o=r[3],l=r[4],s=r[5],u=r[6],f=r[7],c=r[8],v=r[9],d=r[10],p=r[11],y=r[12],m=r[13],b=r[14],A=r[15],w=t[0],x=t[1],_=t[2],k=t[3];return e[0]=w*a+x*l+_*c+k*y,e[1]=w*n+x*s+_*v+k*m,e[2]=w*i+x*u+_*d+k*b,e[3]=w*o+x*f+_*p+k*A,w=t[4],x=t[5],_=t[6],k=t[7],e[4]=w*a+x*l+_*c+k*y,e[5]=w*n+x*s+_*v+k*m,e[6]=w*i+x*u+_*d+k*b,e[7]=w*o+x*f+_*p+k*A,w=t[8],x=t[9],_=t[10],k=t[11],e[8]=w*a+x*l+_*c+k*y,e[9]=w*n+x*s+_*v+k*m,e[10]=w*i+x*u+_*d+k*b,e[11]=w*o+x*f+_*p+k*A,w=t[12],x=t[13],_=t[14],k=t[15],e[12]=w*a+x*l+_*c+k*y,e[13]=w*n+x*s+_*v+k*m,e[14]=w*i+x*u+_*d+k*b,e[15]=w*o+x*f+_*p+k*A,e}});var rD=z((Kje,eD)=>{eD.exports=Tpe;function Tpe(e,r,t){var a=t[0],n=t[1],i=t[2],o,l,s,u,f,c,v,d,p,y,m,b;return r===e?(e[12]=r[0]*a+r[4]*n+r[8]*i+r[12],e[13]=r[1]*a+r[5]*n+r[9]*i+r[13],e[14]=r[2]*a+r[6]*n+r[10]*i+r[14],e[15]=r[3]*a+r[7]*n+r[11]*i+r[15]):(o=r[0],l=r[1],s=r[2],u=r[3],f=r[4],c=r[5],v=r[6],d=r[7],p=r[8],y=r[9],m=r[10],b=r[11],e[0]=o,e[1]=l,e[2]=s,e[3]=u,e[4]=f,e[5]=c,e[6]=v,e[7]=d,e[8]=p,e[9]=y,e[10]=m,e[11]=b,e[12]=o*a+f*n+p*i+r[12],e[13]=l*a+c*n+y*i+r[13],e[14]=s*a+v*n+m*i+r[14],e[15]=u*a+d*n+b*i+r[15]),e}});var aD=z((Qje,tD)=>{tD.exports=Mpe;function Mpe(e,r,t){var a=t[0],n=t[1],i=t[2];return e[0]=r[0]*a,e[1]=r[1]*a,e[2]=r[2]*a,e[3]=r[3]*a,e[4]=r[4]*n,e[5]=r[5]*n,e[6]=r[6]*n,e[7]=r[7]*n,e[8]=r[8]*i,e[9]=r[9]*i,e[10]=r[10]*i,e[11]=r[11]*i,e[12]=r[12],e[13]=r[13],e[14]=r[14],e[15]=r[15],e}});var iD=z((eWe,nD)=>{nD.exports=kpe;function kpe(e,r,t,a){var n=a[0],i=a[1],o=a[2],l=Math.sqrt(n*n+i*i+o*o),s,u,f,c,v,d,p,y,m,b,A,w,x,_,k,T,q,C,E,P,R,N,I,O;return Math.abs(l)<1e-6?null:(l=1/l,n*=l,i*=l,o*=l,s=Math.sin(t),u=Math.cos(t),f=1-u,c=r[0],v=r[1],d=r[2],p=r[3],y=r[4],m=r[5],b=r[6],A=r[7],w=r[8],x=r[9],_=r[10],k=r[11],T=n*n*f+u,q=i*n*f+o*s,C=o*n*f-i*s,E=n*i*f-o*s,P=i*i*f+u,R=o*i*f+n*s,N=n*o*f+i*s,I=i*o*f-n*s,O=o*o*f+u,e[0]=c*T+y*q+w*C,e[1]=v*T+m*q+x*C,e[2]=d*T+b*q+_*C,e[3]=p*T+A*q+k*C,e[4]=c*E+y*P+w*R,e[5]=v*E+m*P+x*R,e[6]=d*E+b*P+_*R,e[7]=p*E+A*P+k*R,e[8]=c*N+y*I+w*O,e[9]=v*N+m*I+x*O,e[10]=d*N+b*I+_*O,e[11]=p*N+A*I+k*O,r!==e&&(e[12]=r[12],e[13]=r[13],e[14]=r[14],e[15]=r[15]),e)}});var lD=z((rWe,oD)=>{oD.exports=Spe;function Spe(e,r,t){var a=Math.sin(t),n=Math.cos(t),i=r[4],o=r[5],l=r[6],s=r[7],u=r[8],f=r[9],c=r[10],v=r[11];return r!==e&&(e[0]=r[0],e[1]=r[1],e[2]=r[2],e[3]=r[3],e[12]=r[12],e[13]=r[13],e[14]=r[14],e[15]=r[15]),e[4]=i*n+u*a,e[5]=o*n+f*a,e[6]=l*n+c*a,e[7]=s*n+v*a,e[8]=u*n-i*a,e[9]=f*n-o*a,e[10]=c*n-l*a,e[11]=v*n-s*a,e}});var uD=z((tWe,sD)=>{sD.exports=qpe;function qpe(e,r,t){var a=Math.sin(t),n=Math.cos(t),i=r[0],o=r[1],l=r[2],s=r[3],u=r[8],f=r[9],c=r[10],v=r[11];return r!==e&&(e[4]=r[4],e[5]=r[5],e[6]=r[6],e[7]=r[7],e[12]=r[12],e[13]=r[13],e[14]=r[14],e[15]=r[15]),e[0]=i*n-u*a,e[1]=o*n-f*a,e[2]=l*n-c*a,e[3]=s*n-v*a,e[8]=i*a+u*n,e[9]=o*a+f*n,e[10]=l*a+c*n,e[11]=s*a+v*n,e}});var cD=z((aWe,fD)=>{fD.exports=Lpe;function Lpe(e,r,t){var a=Math.sin(t),n=Math.cos(t),i=r[0],o=r[1],l=r[2],s=r[3],u=r[4],f=r[5],c=r[6],v=r[7];return r!==e&&(e[8]=r[8],e[9]=r[9],e[10]=r[10],e[11]=r[11],e[12]=r[12],e[13]=r[13],e[14]=r[14],e[15]=r[15]),e[0]=i*n+u*a,e[1]=o*n+f*a,e[2]=l*n+c*a,e[3]=s*n+v*a,e[4]=u*n-i*a,e[5]=f*n-o*a,e[6]=c*n-l*a,e[7]=v*n-s*a,e}});var hD=z((nWe,vD)=>{vD.exports=Cpe;function Cpe(e,r,t){var a,n,i,o=t[0],l=t[1],s=t[2],u=Math.sqrt(o*o+l*l+s*s);return Math.abs(u)<1e-6?null:(u=1/u,o*=u,l*=u,s*=u,a=Math.sin(r),n=Math.cos(r),i=1-n,e[0]=o*o*i+n,e[1]=l*o*i+s*a,e[2]=s*o*i-l*a,e[3]=0,e[4]=o*l*i-s*a,e[5]=l*l*i+n,e[6]=s*l*i+o*a,e[7]=0,e[8]=o*s*i+l*a,e[9]=l*s*i-o*a,e[10]=s*s*i+n,e[11]=0,e[12]=0,e[13]=0,e[14]=0,e[15]=1,e)}});var pD=z((iWe,dD)=>{dD.exports=Dpe;function Dpe(e,r,t){var a=r[0],n=r[1],i=r[2],o=r[3],l=a+a,s=n+n,u=i+i,f=a*l,c=a*s,v=a*u,d=n*s,p=n*u,y=i*u,m=o*l,b=o*s,A=o*u;return e[0]=1-(d+y),e[1]=c+A,e[2]=v-b,e[3]=0,e[4]=c-A,e[5]=1-(f+y),e[6]=p+m,e[7]=0,e[8]=v+b,e[9]=p-m,e[10]=1-(f+d),e[11]=0,e[12]=t[0],e[13]=t[1],e[14]=t[2],e[15]=1,e}});var yD=z((oWe,mD)=>{mD.exports=Epe;function Epe(e,r){return e[0]=r[0],e[1]=0,e[2]=0,e[3]=0,e[4]=0,e[5]=r[1],e[6]=0,e[7]=0,e[8]=0,e[9]=0,e[10]=r[2],e[11]=0,e[12]=0,e[13]=0,e[14]=0,e[15]=1,e}});var bD=z((lWe,gD)=>{gD.exports=Ppe;function Ppe(e,r){return e[0]=1,e[1]=0,e[2]=0,e[3]=0,e[4]=0,e[5]=1,e[6]=0,e[7]=0,e[8]=0,e[9]=0,e[10]=1,e[11]=0,e[12]=r[0],e[13]=r[1],e[14]=r[2],e[15]=1,e}});var 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