From 77f6a013ad04f8fc66eef0cb0df1137c8bce827a Mon Sep 17 00:00:00 2001 From: AlexanderMitrofanov Date: Mon, 26 Oct 2026 14:00:56 +0100 Subject: [PATCH 1/5] fix(gui): compact and align parameter inputs (#287) --- gui/styles.css | 28 ++++++++++++++++------------ scripts/wasm/test-browser.py | 9 ++++++++- 2 files changed, 24 insertions(+), 13 deletions(-) diff --git a/gui/styles.css b/gui/styles.css index 360ba4c4..a87f949f 100644 --- a/gui/styles.css +++ b/gui/styles.css @@ -281,24 +281,28 @@ fieldset { .field-grid { display:grid; - grid-template-columns:repeat(auto-fill,minmax(220px,1fr)); - gap:20px 24px; - align-items:start; - margin-bottom:20px; + grid-template-columns:repeat(auto-fit,minmax(10rem,14rem)); + gap:12px 16px; + align-items:end; + justify-content:start; + margin-bottom:12px; } /* Explicit rows preserve the requested grouping; subgrid aligns inputs below - labels of different heights without fixing a font-dependent label height. */ -.field-grid.columns-1 { grid-template-columns:minmax(0,1fr); } -.field-grid.columns-2 { grid-template-columns:repeat(2,minmax(0,1fr)); } -.field-grid.columns-3 { grid-template-columns:repeat(3,minmax(0,1fr)); } -.field-grid.columns-4 { grid-template-columns:repeat(4,minmax(0,1fr)); } -.field-grid.columns-5 { grid-template-columns:repeat(5,minmax(0,1fr)); } + labels of different heights without fixing a font-dependent label height. + Bounded tracks keep short rows left-aligned instead of stretching controls + across the complete panel. */ +.field-grid.columns-1 { grid-template-columns:minmax(10rem,38rem); } +.field-grid.columns-2 { grid-template-columns:repeat(2,minmax(10rem,18rem)); } +.field-grid.columns-3 { grid-template-columns:repeat(3,minmax(9rem,14rem)); } +.field-grid.columns-4 { grid-template-columns:repeat(4,minmax(8.5rem,12rem)); } +.field-grid.columns-5 { grid-template-columns:repeat(5,minmax(8rem,11rem)); } .field-grid > .field:not(.check) { display:grid; grid-row:span 4; grid-template-rows:subgrid; row-gap:5px; } +.field-grid > .field:not(.check) > label { align-self:end; } .field-grid > .field:not(.check) > :nth-child(2) { align-self:start; } -.accessibility-columns { display:grid; grid-template-columns:repeat(2,minmax(0,1fr)); gap:24px; margin-top:20px; } +.accessibility-columns { display:grid; grid-template-columns:repeat(2,minmax(16rem,32rem)); gap:16px; justify-content:start; margin-top:12px; } .accessibility-columns > div { min-width:0; } -.seed-mode { max-width:24rem; margin-bottom:20px; } +.seed-mode { max-width:24rem; margin-bottom:12px; } .field-grid:has(#noSeed) { display:none; } #query,#target { white-space:pre; overflow:auto; } #sequence-help,#general-options p { max-width:none; } diff --git a/scripts/wasm/test-browser.py b/scripts/wasm/test-browser.py index 990e5e58..59c59650 100644 --- a/scripts/wasm/test-browser.py +++ b/scripts/wasm/test-browser.py @@ -114,10 +114,17 @@ def predict(): for prefix, group in [('q', 'query-options'), ('t', 'target-options')]: open_group(group) - # Each explicit row shares label height, including wrapped labels. + # Each explicit row shares label height, including wrapped labels, and + # compact controls stay left-aligned instead of filling the panel. for keys in [[prefix + suffix for suffix in ['Set', 'Region', 'IntLenMax', 'IntLoopMax', 'RegionLenMax']], [prefix + suffix for suffix in ['Acc', 'AccW', 'AccL', 'PfScale']]]: tops = [page.locator('#' + key).bounding_box()['y'] for key in keys] assert max(tops) - min(tops) < 1, tops + label_bottoms = [page.locator('#' + key).locator('xpath=preceding-sibling::label').bounding_box()['y'] + page.locator('#' + key).locator('xpath=preceding-sibling::label').bounding_box()['height'] for key in keys] + assert max(label_bottoms) - min(label_bottoms) < 1, label_bottoms + first = page.locator('#' + prefix + 'Set').bounding_box() + second = page.locator('#' + prefix + 'Region').bounding_box() + assert 8 <= second['x'] - first['x'] - first['width'] <= 20 + assert page.locator('#' + prefix + 'AccW').bounding_box()['width'] <= 224 expect(page.locator('#' + prefix + 'AccFile')).to_be_disabled() page.locator('#' + prefix + 'Acc').select_option('P') expect(page.locator('#' + prefix + 'AccFile')).to_be_enabled() From 4a094e36bd8414b966a44423fc112f25da038f54 Mon Sep 17 00:00:00 2001 From: AlexanderMitrofanov Date: Mon, 26 Oct 2026 14:01:23 +0100 Subject: [PATCH 2/5] refactor(gui): separate CSV parameter tab (#287) --- gui/app.js | 11 ++++++----- gui/options.js | 3 ++- scripts/wasm/test-browser.py | 15 ++++++++------- 3 files changed, 16 insertions(+), 13 deletions(-) diff --git a/gui/app.js b/gui/app.js index 446a7f60..53494acf 100644 --- a/gui/app.js +++ b/gui/app.js @@ -120,10 +120,10 @@ function checkbox(container, key, labelText, description) { if (description) label.title = description; label.append(input, document.createTextNode(labelText)); container.append(label); return input; } -const outputBody = byId('output-options').querySelector('.group-body'); -outputBody.append(element('h3', 'CSV output columns', 'subheading')); -outputBody.append(element('p', 'seq1 is the target; seq2 is the query. Hover over a column name for details. Select columns for the table and CSV download; table visibility can be changed after computation.', 'input-help')); -const selectionTools = element('div', '', 'selection-tools'); outputBody.append(selectionTools); +const csvBody = byId('csv-options').querySelector('.group-body'); +csvBody.append(element('h3', 'CSV output columns', 'subheading')); +csvBody.append(element('p', 'seq1 is the target; seq2 is the query. Hover over a column name for details. Select columns for the table and CSV download; table visibility can be changed after computation.', 'input-help')); +const selectionTools = element('div', '', 'selection-tools'); csvBody.append(selectionTools); const selectColumns = (selection) => { csvOrder = [...selection]; for (const input of csvInputs) input.checked = selection.includes(input.value); inputsChanged(); }; @@ -142,12 +142,13 @@ for (const group of CSV_GROUPS) { inputsChanged(); }); legend.append(button); } - const picker = element('div', '', 'checkbox-grid csv-columns'); section.append(legend, picker); outputBody.append(section); + const picker = element('div', '', 'checkbox-grid csv-columns'); section.append(legend, picker); csvBody.append(section); for (const key of group.keys) { const column = CSV_CATALOG.find((column) => column.key === key); csvInputs.push(checkbox(picker, key, key, column.description)); } } +const outputBody = byId('output-options').querySelector('.group-body'); outputBody.append(element('h3', 'Additional output files', 'subheading')); outputBody.append(element('p', 'Reports are computed with the same settings. ASCII, detailed and ensemble reports each run a fresh engine instance and can take extra time.', 'input-help')); const outputPicker = element('div', '', 'checkbox-grid'); outputBody.append(outputPicker); diff --git a/gui/options.js b/gui/options.js index 4e95bccf..039d5214 100644 --- a/gui/options.js +++ b/gui/options.js @@ -86,7 +86,8 @@ export const GROUPS = [ ['noSeed'], ['seedTQ'], ['seedBP', 'seedMaxUP', 'seedQMaxUP', 'seedTMaxUP'], ['seedMaxE', 'seedMinPu', 'seedMaxEhybrid'], ['seedQRange', 'seedTRange'], ['seedNoGU', 'seedNoGUend'], ]) }, - { key: 'output-options', label: 'Output', fields: [...fields.values()].filter((field) => field.key.startsWith('out')) }, + { key: 'output-options', label: 'Output', fields: [...fields.values()].filter((field) => field.key.startsWith('out') && field.key !== 'outCsvSort') }, + { key: 'csv-options', label: 'CSV', fields: [fields.get('outCsvSort')] }, { key: 'interaction-options', label: 'Model & Energy', rows: rows([ ['model', 'mode'], ['energyVRNA', 'temperature', 'energyAdd'], ['energyNoDangles'], ['windowWidth', 'windowOverlap'], ['kineticScore'], diff --git a/scripts/wasm/test-browser.py b/scripts/wasm/test-browser.py index 59c59650..44f13c30 100644 --- a/scripts/wasm/test-browser.py +++ b/scripts/wasm/test-browser.py @@ -76,7 +76,7 @@ def predict(): expect(page.locator('#version-info')).to_contain_text(f'ViennaRNA {vienna_version}') for logo in page.locator('.site-header img').all(): assert logo.evaluate('node => node.complete && node.naturalWidth > 0') - for key in ['seed-options', 'output-options', 'interaction-options', 'query-options', 'target-options', 'general-options', 'sequence-input']: + for key in ['seed-options', 'output-options', 'csv-options', 'interaction-options', 'query-options', 'target-options', 'general-options', 'sequence-input']: open_group(key) expect(page.get_by_role('radio', name='Prediction')).to_be_checked() @@ -99,7 +99,7 @@ def predict(): expect(page.locator('#tab-sequence-input')).to_be_focused() # Review layout, task defaults and modes work with native parameters. - assert page.locator('[role=tab]').all_text_contents() == ['Sequences', 'Seed', 'Output', 'Model & Energy', 'Query', 'Target', 'CLI-only'] + assert page.locator('[role=tab]').all_text_contents() == ['Sequences', 'Seed', 'Output', 'CSV', 'Model & Energy', 'Query', 'Target', 'CLI-only'] expect(page.locator('.brand')).to_contain_text('IntaRNA package') expect(page.locator('#results-title')).to_have_text('Results') expect(page.locator('#outNumber')).to_have_value('10') @@ -158,7 +158,7 @@ def predict(): page.locator('#seed-mode').select_option('identify') expect(page.locator('#seedBP')).to_be_enabled() expect(page.locator('#seedTQ')).to_be_disabled() - open_group('output-options') + open_group('csv-options') groups = page.locator('.csv-group') assert groups.count() == 5 for group in groups.all(): @@ -173,7 +173,7 @@ def predict(): # Inspect all changed panels at desktop and mobile widths. for width in [1440, 390]: page.set_viewport_size({'width': width, 'height': 1100 if width == 1440 else 844}) - for key in ['sequence-input', 'seed-options', 'output-options', 'interaction-options', 'query-options', 'target-options', 'general-options']: + for key in ['sequence-input', 'seed-options', 'output-options', 'csv-options', 'interaction-options', 'query-options', 'target-options', 'general-options']: open_group(key) assert page.evaluate('document.documentElement.scrollWidth <= innerWidth'), (width, key) if args.screenshot: @@ -377,7 +377,8 @@ def predict(): fill('rri', '1||||||||||&1||||||||||:1|||||||||&2|||||||||') open_group('output-options') page.locator('#output-options input[value="detailed"]').check() - page.locator('#output-options input[value="ED1"]').check() + open_group('csv-options') + page.locator('#csv-options input[value="ED1"]').check() predict() expect(status).to_contain_text('Evaluation complete') expect(rows).to_have_count(2) @@ -397,9 +398,9 @@ def predict(): assert 'detailed' in saved['gui']['reports'] # Visualization stays available when structure/identity columns are deselected. - open_group('output-options') + open_group('csv-options') page.get_by_role('button', name='Clear selection', exact=True).click() - page.locator('#output-options input[value="E"]').check() + page.locator('#csv-options input[value="E"]').check() predict() rows.first.get_by_role('button', name='Visualize').click() expect(active.locator('[data-role=varri-frame]')).to_be_visible() From f59d5dcc89d8141152968b897fe4647f10824a8a Mon Sep 17 00:00:00 2001 From: AlexanderMitrofanov Date: Mon, 26 Oct 2026 14:01:44 +0100 Subject: [PATCH 3/5] feat(gui): describe auxiliary output formats (#287) --- gui/app.js | 2 +- gui/options.js | 24 ++++++++++++++++-------- scripts/wasm/test-browser.py | 5 +++++ 3 files changed, 22 insertions(+), 9 deletions(-) diff --git a/gui/app.js b/gui/app.js index 53494acf..d0c9cdbf 100644 --- a/gui/app.js +++ b/gui/app.js @@ -152,7 +152,7 @@ const outputBody = byId('output-options').querySelector('.group-body'); outputBody.append(element('h3', 'Additional output files', 'subheading')); outputBody.append(element('p', 'Reports are computed with the same settings. ASCII, detailed and ensemble reports each run a fresh engine instance and can take extra time.', 'input-help')); const outputPicker = element('div', '', 'checkbox-grid'); outputBody.append(outputPicker); -for (const output of EXTRA_OUTPUTS) outputInputs.push(checkbox(outputPicker, output.key, output.label)); +for (const output of EXTRA_OUTPUTS) outputInputs.push(checkbox(outputPicker, output.key, output.label, output.description)); const generalBody = group('general-options', 'CLI-only'); generalBody.append(element('p', 'Process-level settings (threads, log paths, parameter-file paths and terminal help) are available in the CLI.')); const docs = element('a', 'Full CLI parameter documentation'); docs.href = 'https://github.com/BackofenLab/IntaRNA#readme'; generalBody.append(docs); diff --git a/gui/options.js b/gui/options.js index 039d5214..8bc600ff 100644 --- a/gui/options.js +++ b/gui/options.js @@ -99,12 +99,20 @@ export const FIELDS = GROUPS.flatMap((group) => group.fields); export const PARAMETER_DEFAULTS = Object.freeze(Object.fromEntries(FIELDS.map((field) => [field.key, field.value]))); export const UI_DEFAULTS = Object.freeze({ ...PARAMETER_DEFAULTS, outNumber: 10 }); export const EXTRA_OUTPUTS = [ - ['qMinE', 'Query minimum energies', true], ['tMinE', 'Target minimum energies', true], - ['qAcc', 'Query opening energies'], ['tAcc', 'Target opening energies'], - ['qPu', 'Query unpaired probabilities'], ['tPu', 'Target unpaired probabilities'], - ['qSpotProb', 'Query interaction probabilities', true], ['tSpotProb', 'Target interaction probabilities', true], - ['pMinE', 'Pair minimum energies', true], ['spotProb', 'Interaction spot probabilities', true], - ['bpProb', 'Actual base-pair probabilities (model P)', true], ['bpsvg', 'Base-pair probability SVG (model P)', true], - ['normal', 'ASCII interaction structures'], ['detailed', 'Detailed interaction report'], ['ensemble', 'Ensemble report'], -].map(([key, label, predictionOnly = false]) => ({ key, label, prediction: predictionOnly })); + ['qMinE', 'Query minimum energies', true, 'CSV position profile of the lowest interaction energy covering each query nucleotide. Useful for locating favorable query sites.'], + ['tMinE', 'Target minimum energies', true, 'CSV position profile of the lowest interaction energy covering each target nucleotide. Useful for locating favorable target sites.'], + ['qAcc', 'Query opening energies', false, 'RNAplfold-style opening-energy matrix for the query. Use it to inspect or reproduce query accessibility.'], + ['tAcc', 'Target opening energies', false, 'RNAplfold-style opening-energy matrix for the target. Use it to inspect or reproduce target accessibility.'], + ['qPu', 'Query unpaired probabilities', false, 'RNAplfold-style query unpaired-probability matrix, converted from rounded opening energies.'], + ['tPu', 'Target unpaired probabilities', false, 'RNAplfold-style target unpaired-probability matrix, converted from rounded opening energies.'], + ['qSpotProb', 'Query interaction probabilities', true, 'CSV position profile estimating the probability that each query nucleotide is covered by an interaction.'], + ['tSpotProb', 'Target interaction probabilities', true, 'CSV position profile estimating the probability that each target nucleotide is covered by an interaction.'], + ['pMinE', 'Pair minimum energies', true, 'CSV target-by-query matrix of the minimum interaction energy covering each nucleotide pair. Useful as an energy heatmap.'], + ['spotProb', 'Interaction spot probabilities', true, 'CSV target-by-query matrix, or selected spots, estimating interaction coverage probabilities. Useful as a probability heatmap.'], + ['bpProb', 'Actual base-pair probabilities (model P)', true, 'CSV target-by-query matrix of actual base-pair probabilities for the model P interaction ensemble.'], + ['bpsvg', 'Base-pair probability SVG (model P)', true, 'SVG dot plot of model P base-pair probabilities with accessibility frames and seed/MFE outlines.'], + ['normal', 'ASCII interaction structures', false, 'Compact text report with ASCII interaction structures and their overall energies.'], + ['detailed', 'Detailed interaction report', false, 'Expanded text report with interaction structures, coordinates and energy contributions.'], + ['ensemble', 'Ensemble report', false, 'Text report of interaction and intramolecular ensemble energies and partition functions.'], +].map(([key, label, predictionOnly, description]) => ({ key, label, prediction: predictionOnly, description })); export const ENSEMBLE_COLUMNS = ['Eall', 'Zall', 'EallTotal', 'P_E']; diff --git a/scripts/wasm/test-browser.py b/scripts/wasm/test-browser.py index 44f13c30..d30a265f 100644 --- a/scripts/wasm/test-browser.py +++ b/scripts/wasm/test-browser.py @@ -158,6 +158,11 @@ def predict(): page.locator('#seed-mode').select_option('identify') expect(page.locator('#seedBP')).to_be_enabled() expect(page.locator('#seedTQ')).to_be_disabled() + open_group('output-options') + output_labels = page.locator('#output-options .checkbox-grid label') + assert output_labels.count() == 15 + assert all(label.get_attribute('title') for label in output_labels.all()) + expect(page.locator('#output-options input[value="pMinE"]').locator('xpath=..')).to_have_attribute('title', re.compile('energy heatmap')) open_group('csv-options') groups = page.locator('.csv-group') assert groups.count() == 5 From da44419bcb18d342baf409511571c286cf272486 Mon Sep 17 00:00:00 2001 From: AlexanderMitrofanov Date: Mon, 26 Oct 2026 14:22:46 +0100 Subject: [PATCH 4/5] feat(gui): visualize additional output files (#287) --- .gitattributes | 3 + .github/workflows/build-wasm.yml | 3 + ChangeLog | 24 +++ README.md | 1 + gui/docs/step3-frontend-ui.md | 15 +- gui/docs/step4-results-and-deployment.md | 46 ++++- gui/index.html | 4 +- gui/output-visualization.js | 230 +++++++++++++++++++++++ gui/sessions.js | 27 +-- gui/styles.css | 92 +++++++++ gui/tests/output-visualization.test.mjs | 63 +++++++ gui/vendor/README.md | 16 ++ gui/vendor/plotly-LICENSE.txt | 21 +++ gui/vendor/plotly-cartesian.min.js | 149 +++++++++++++++ gui/vendor/plotly.css | 49 +++++ scripts/wasm/stage.sh | 10 +- scripts/wasm/test-browser.py | 27 ++- 17 files changed, 752 insertions(+), 28 deletions(-) create mode 100644 gui/output-visualization.js create mode 100644 gui/tests/output-visualization.test.mjs create mode 100644 gui/vendor/README.md create mode 100644 gui/vendor/plotly-LICENSE.txt create mode 100644 gui/vendor/plotly-cartesian.min.js create mode 100644 gui/vendor/plotly.css diff --git a/.gitattributes b/.gitattributes index cb6403b9..ab03fb2f 100644 --- a/.gitattributes +++ b/.gitattributes @@ -1,3 +1,6 @@ # Keep the third-party parser separate in reviews and preserve upstream bytes. src/bin/nlohmann/json.hpp linguist-vendored src/bin/nlohmann/LICENSE.MIT linguist-vendored -whitespace +gui/vendor/plotly-cartesian.min.js linguist-vendored +gui/vendor/plotly.css linguist-vendored +gui/vendor/plotly-LICENSE.txt linguist-vendored -whitespace diff --git a/.github/workflows/build-wasm.yml b/.github/workflows/build-wasm.yml index 8befa501..f951d568 100644 --- a/.github/workflows/build-wasm.yml +++ b/.github/workflows/build-wasm.yml @@ -90,6 +90,9 @@ jobs: test -s _site/api/index.html test -s _site/gui/index.html test -s _site/gui/wasm/intarna.wasm + test -s _site/gui/vendor/plotly-cartesian.min.js + test -s _site/gui/vendor/plotly.css + test -s _site/gui/licenses/Plotly.txt - uses: actions/upload-artifact@v4 with: name: intarna-pages-preview diff --git a/ChangeLog b/ChangeLog index c204105e..f05e9311 100644 --- a/ChangeLog +++ b/ChangeLog @@ -14,6 +14,10 @@ ## Interface and handling +- compact and left-align GUI parameter rows, split CSV controls into their own + tab, describe every additional output format and plot energy/probability files + with sequence names, source tabs and PNG export (PR #287 review) + - reorganize GUI parameters, add conditional seed/accessibility controls and grouped CSV defaults, expand FASTA limits and refine result headers (PR #299) @@ -285,6 +289,26 @@ energies, restricted partition sums, and trackers. ################################################################################ ################################################################################ +261026 Alexander Mitrofanov + * gui/{app,options,sessions,output-visualization}.js, + gui/{index.html,styles.css} + * compact bounded parameter rows while preserving their grouping and align + wrapped labels above left-aligned controls + * move CSV sorting/column selection into a dedicated tab between Output and + Model & Energy; add content/use tooltips to all additional output formats + + show sequence-aware Plotly profiles, heatmaps and selected-spot bars beside + native file content; add header downloads and verified PNG export + * .gitattributes, gui/vendor/, scripts/wasm/stage.sh, + .github/workflows/build-wasm.yml + + vendor and checksum Plotly.js Cartesian 4.1.2, stage its MIT license and + verify both assets in the combined Pages artifact + * gui/tests/output-visualization.test.mjs, scripts/wasm/test-browser.py, + README.md, gui/docs/ + + cover signed categorical axes, file/sequence mapping, malformed data, + responsive compact layout, plot rendering and PNG downloads in real + Chromium/Firefox with the existing WASM engine + * address https://github.com/BackofenLab/IntaRNA/pull/287#issuecomment-6416573560 + 261024 Alexander Mitrofanov * gui/{app,options,columns}.js, gui/{index.html,styles.css} * organize tabs/rows as Sequences, Seed, Output, Model & Energy, Query, diff --git a/README.md b/README.md index ce94edbd..aeaab169 100644 --- a/README.md +++ b/README.md @@ -9,6 +9,7 @@ Predict short RNA pairs or evaluate supplied structures locally with the [browse The browser accepts up to 50 records per strand, 2–5,000 nucleotides each, with longest selected query × longest selected target at most 1,000,000. Prediction defaults to 10 interactions per pair and includes opening and seed energies; evaluation selects all energy columns. Computed runs stay in separate, foldable sessions under Results in the current tab. Name and select sessions to restore their inputs and compare results; editing or resetting parameters keeps earlier runs. Select an interaction to view it in vaRRI, or download a session’s ZIP with inputs, compiled versions, reproducible parameters and all outputs. Sessions are temporary and are cleared when the page is reloaded. +Minimum-energy and interaction-probability output files include local Plotly visualizations with PNG export; every additional file retains its original text view and download. See the [WebAssembly build instructions](gui/docs/step1-wasm-compilation.md) and [interface/deployment notes](gui/docs/step4-results-and-deployment.md). diff --git a/gui/docs/step3-frontend-ui.md b/gui/docs/step3-frontend-ui.md index e0436b75..59466b2b 100644 --- a/gui/docs/step3-frontend-ui.md +++ b/gui/docs/step3-frontend-ui.md @@ -14,8 +14,10 @@ groups, followed by the compute button, results, additional files and versions. All working content is left aligned; two equally sized strand editors collapse into one column on mobile. The shared institutional header is the strongest visual element. The wrapping tab bar identifies parameter groups. Numeric inputs -are 9 rem wide within a responsive grid of compact controls; text/data fields -retain useful width. +are at most 9 rem wide within bounded, left-aligned row grids; select/text inputs +use compact type-specific tracks and text/data fields retain useful width. Rows +keep their scientific grouping without stretching across the complete panel, +use 16 px horizontal gaps and bottom-align labels above their controls. The institutional link reads “Bioinformatics - University of Freiburg” and opens the group website. Footer and table notes use the available width, wrapping only when the viewport requires it. @@ -24,7 +26,7 @@ when the viewport requires it. Group logo IntaRNA package / RNA–RNA interaction analysis University logo RNA–RNA interactions Computations stay on your device Task: Prediction / Evaluation -[ Sequences | Seed | Output | Model & Energy | Query | Target | CLI-only ] +[ Sequences | Seed | Output | CSV | Model & Energy | Query | Target | CLI-only ] [ Active panel: e.g. query + target, start indices, evaluation structures ] Compute Input Parameters: Examples / Store / Load / Reset Results / Show-Hide / name / ZIP download / delete @@ -49,7 +51,10 @@ one), and accepts 0–100. Zero enables accessibility-only output. the worker boundary. Query/target retain their distinct interior-loop defaults (16 and 10). Meta-options such as `acc`, `accW`, `accL`, `intLenMax` and `intLoopMax` are represented by per-strand controls to avoid conflicting values. -FASTA headers supply sequence names instead of `qId`/`tId`. `outCsvSort` selects a native download sort column; table sorting is independent. +FASTA headers supply sequence names instead of `qId`/`tId`. The dedicated CSV +tab contains `outCsvSort` and the interaction-table column choices; Output keeps +prediction filters and additional file formats. `outCsvSort` selects a native +download sort column; table sorting is independent. CSV uses a fixed semicolon delimiter. Process settings (threads, file/log paths, parameter files, help/version commands) are replaced by the worker lifecycle, local data inputs, downloads and displayed @@ -68,6 +73,8 @@ Function, with per-group selection actions and name-only labels with description tooltips. Prediction adds ED1, ED2, seedE, seedStart1 and seedStart2 to the native CSV columns; evaluation selects all energy outputs. JSON records these browser defaults explicitly so native replay retains the same output. +Every additional output checkbox has a descriptive tooltip covering its content, +format and intended use, including the model restrictions shown in its label. Prediction accepts plain sequence or up to 50 FASTA records per strand. Evaluation requires one query and target and 1–100 predefined structures. diff --git a/gui/docs/step4-results-and-deployment.md b/gui/docs/step4-results-and-deployment.md index 0d665211..c87d1b58 100644 --- a/gui/docs/step4-results-and-deployment.md +++ b/gui/docs/step4-results-and-deployment.md @@ -24,9 +24,27 @@ Every heading is a keyboard-operable sort button with `aria-sort`. Search covers all returned values. A separate checklist shows/hides table columns after the run; it does not change selected CSV output. All identifiers, output previews and diagnostics render with `textContent`. Selected extra files appear below the -table with bounded text previews and complete downloads, including SVG source. +table with their original filename, covered sequence/sequence-pair names, a +header-level download, and bounded text previews, including SVG source. Empty output is successful and still permits CSV/accessibility downloads. +## Additional output visualizations + +Plot-capable additional CSV files open on a Visualization tab, with the original +File Content in an adjacent tab. Query/target minimum-energy and spot-probability +profiles use line plots; pair minimum-energy and all-spot probability matrices +use heatmaps; explicitly requested spot probabilities use a bar plot. Plot axes +use the literal coordinate strings from IntaRNA rather than numerical scales, so +signed indices cross from -1 to 1 without inventing coordinate zero. Plot titles +and additional-file headers identify the target/query records covered by native +`-t#q#` or `-s#` filename suffixes. + +Plotly renders locally from the pinned Cartesian bundle. A separate Export PNG +button produces a 1400 × 850 image for the active plot; the normal file download +and reproducible ZIP retain untouched native data. Plots render lazily when their +file is unfolded, resize with restored sessions, and are purged when a session is +deleted. Non-plot formats keep the direct content view. + ## Selected interaction in vaRRI Each row has a keyboard-accessible View button; clicking a row also selects it. @@ -91,15 +109,20 @@ python3 scripts/wasm/test-browser.py http://127.0.0.1:8765 --browser firefox ``` The staging script includes matched WASM assets, only the application source -files needed at runtime, compiled version metadata and dependency notices. Build-time `build-info.json` +files needed at runtime, compiled version metadata and dependency notices. It +also verifies and stages the pinned Plotly.js 4.1.2 Cartesian bundle and MIT +license; no CDN is used. Build-time `build-info.json` and `build-info.txt` record actual CLI IntaRNA/ViennaRNA/Boost versions, source commit and tracked modifications, SDK version and asset SHA-256 digests. Staging checks these digests and preserves the original metadata; it never replaces the compiled revision with a later staging checkout. The footer displays versions. It needs the same activated SDK and dependency build directory as the build. -No compiled artifacts are committed. HTTP(S), module workers and WebAssembly +No generated WASM artifacts are committed; the reviewed minified Plotly browser +distribution is the only new runtime artifact. HTTP(S), module workers and WebAssembly are required; `file://` and legacy browsers are unsupported. No backend, -SharedArrayBuffer, credentials, CDN or cross-origin headers are needed. +SharedArrayBuffer, credentials, CDN or cross-origin headers are needed. CSP +keeps scripts/styles same-origin and allows ephemeral blob images solely for +PNG export. The existing repository already publishes its user guide and API with Pages. Publishing a second independent artifact would overwrite them. Therefore @@ -156,6 +179,21 @@ GitHub's platform checks independently cover GCC 14 release/debug and Apple Clang. Deployment itself occurs only after merge; local browser tests do not claim a live Pages deployment. +### PR #287 visualization review verification, 2026-10-26 + +- `npm test --prefix gui`: all 25 protocol, results, output-visualization, + archive, upload and worker tests pass. Profile and matrix cases cover signed + categorical coordinates, sequence names, missing values and malformed data. +- Playwright 1.64.0 with Chromium 156 and Firefox 157 passes the full real-WASM + suite, including the compact desktop/mobile parameter layout, separate CSV + tab, output tooltips, native-file headers, Plotly rendering and a PNG whose + signature is checked after download. The staged GUI uses the matching + revision `7378801` engine; scientific code and compiled assets are unchanged. +- Desktop screenshots for every parameter tab and the completed session were + visually reviewed; the 390 px viewport has no document overflow. +- Plotly 4.1.2 is pinned by npm integrity and bundle SHA-256, staged locally with + its MIT license. Shell/Python syntax and `git diff --check` pass. + ### PR #287 review verification, 2026-10-21 - Emscripten 4.0.23 rebuild using the pinned official dependency archives passes diff --git a/gui/index.html b/gui/index.html index a77b74e7..08878a27 100644 --- a/gui/index.html +++ b/gui/index.html @@ -4,10 +4,12 @@ - + IntaRNA · RNA–RNA interactions + + diff --git a/gui/output-visualization.js b/gui/output-visualization.js new file mode 100644 index 00000000..9c901089 --- /dev/null +++ b/gui/output-visualization.js @@ -0,0 +1,230 @@ +const PROFILE_TYPES = new Map([ + ['qMinE', { strand: 'query', value: 'minE', title: 'Minimum-energy profile', yTitle: 'Minimum interaction energy (kcal/mol)' }], + ['tMinE', { strand: 'target', value: 'minE', title: 'Minimum-energy profile', yTitle: 'Minimum interaction energy (kcal/mol)' }], + ['qSpotProb', { strand: 'query', value: 'spotProb', title: 'Interaction-probability profile', yTitle: 'Interaction probability' }], + ['tSpotProb', { strand: 'target', value: 'spotProb', title: 'Interaction-probability profile', yTitle: 'Interaction probability' }], +]); +const MATRIX_TYPES = new Map([ + ['pMinE', { value: 'minE', title: 'Pair minimum energies', colorTitle: 'kcal/mol', colorscale: [[0, '#0f4676'], [0.5, '#8bbbd8'], [1, '#f8fbff']] }], + ['spotProb', { value: 'spotProb', title: 'Interaction spot probabilities', colorTitle: 'Probability', colorscale: [[0, '#f8fbff'], [0.5, '#80b6d8'], [1, '#145a96']] }], +]); + +function outputType(name) { + const match = /^(qMinE|tMinE|qSpotProb|tSpotProb|pMinE|spotProb)(?:-t\d+q\d+)?\.csv$/.exec(name); + return match?.[1] ?? null; +} + +function table(text) { + if (typeof text !== 'string' || !text.trim()) throw new Error('The output file is empty.'); + const lines = text.trimEnd().split(/\r?\n/), header = lines.shift().split(';'); + if (header.length < 2 || new Set(header).size !== header.length) throw new Error('The output file has an invalid header.'); + const rows = lines.filter((line) => line.trim()).map((line) => { + const cells = line.split(';'); + if (cells.length !== header.length) throw new Error('The output file contains a malformed row.'); + return cells; + }); + if (!rows.length) throw new Error('The output file contains no values to plot.'); + return { header, rows }; +} + +function number(value) { + if (/^(NA|NAN)$/i.test(value.trim())) return null; + const parsed = Number(value); + if (!Number.isFinite(parsed)) throw new Error(`The output contains a non-numeric value: ${value}`); + return parsed; +} + +function plotText(value) { + return String(value).replaceAll('&', '&').replaceAll('<', '<').replaceAll('>', '>'); +} + +function record(request, strand, index) { + return request?.[strand]?.records?.[index - 1]?.id ?? ''; +} + +export function outputFileContext(name, request) { + const type = outputType(name) ?? /^(qAcc|tAcc|qPu|tPu|bpProb|bpsvg)/.exec(name)?.[1] ?? ''; + const pair = /-t(\d+)q(\d+)(?=\.[^.]+$)/.exec(name); + if (pair) { + const target = record(request, 'target', Number(pair[1])), query = record(request, 'query', Number(pair[2])); + return { target, query, label: [target, query].filter(Boolean).join(' : ') }; + } + const single = /-s(\d+)(?=\.[^.]+$)/.exec(name); + if (single && /^[qt](Acc|Pu)/.test(type)) { + const strand = type.startsWith('q') ? 'query' : 'target', value = record(request, strand, Number(single[1])); + return { [strand]: value, label: value }; + } + const target = request?.target?.records?.length === 1 ? request.target.records[0].id : ''; + const query = request?.query?.records?.length === 1 ? request.query.records[0].id : ''; + if (/^[qt](Acc|Pu)$/.test(type)) { + const value = type.startsWith('q') ? query : target; + return { [type.startsWith('q') ? 'query' : 'target']: value, label: value }; + } + return { target, query, label: [target, query].filter(Boolean).join(' : ') }; +} + +function baseLayout(title) { + return { + title: { text: title, x: 0.04, xanchor: 'left', font: { size: 17 } }, + autosize: true, + height: 420, + margin: { l: 72, r: 28, t: 62, b: 78 }, + paper_bgcolor: 'rgba(0,0,0,0)', + plot_bgcolor: '#fff', + font: { family: 'Segoe UI, Tahoma, Geneva, sans-serif', color: '#1c2b39', size: 12 }, + }; +} + +function categoricalAxis(title, values) { + return { title: { text: title }, type: 'category', categoryorder: 'array', categoryarray: values, automargin: true, gridcolor: '#e0e8f0' }; +} + +export function outputVisualization(file, request) { + const type = outputType(file.name); + if (!type) return null; + const parsed = table(file.text), context = outputFileContext(file.name, request); + if (PROFILE_TYPES.has(type)) { + const profile = PROFILE_TYPES.get(type); + if (parsed.header.length !== 3 || parsed.header[0] !== 'idx' || parsed.header[2] !== profile.value) throw new Error(`Unexpected ${type} profile columns.`); + const x = parsed.rows.map((row) => String(row[0])), y = parsed.rows.map((row) => number(row[2])); + const sequence = parsed.header[1] || context[profile.strand] || (profile.strand === 'query' ? 'Query' : 'Target'); + return { + kind: 'profile', context, + traces: [{ + type: 'scatter', mode: 'lines+markers', x, y, text: parsed.rows.map((row) => row[1]), + name: plotText(sequence), line: { color: '#145a96', width: 2 }, marker: { color: '#145a96', size: 6 }, + connectgaps: false, hovertemplate: 'Index %{x}
Nucleotide %{text}
Value %{y}', + }], + layout: { + ...baseLayout(`${profile.title}: ${plotText(sequence)}`), + xaxis: categoricalAxis(`${profile.strand === 'query' ? 'Query' : 'Target'} index`, x), + yaxis: { title: { text: profile.yTitle }, automargin: true, gridcolor: '#e0e8f0', rangemode: profile.value === 'spotProb' ? 'tozero' : 'normal' }, + }, + }; + } + + const matrix = MATRIX_TYPES.get(type); + if (type === 'spotProb' && parsed.header[0] === 'spot') { + if (parsed.header.length !== 2 || parsed.header[1] !== 'probability') throw new Error('Unexpected selected-spot probability columns.'); + const x = parsed.rows.map((row) => String(row[0])), y = parsed.rows.map((row) => number(row[1])); + return { + kind: 'spots', context, + traces: [{ type: 'bar', x, y, marker: { color: '#145a96' }, hovertemplate: 'Spot %{x}
Probability %{y}' }], + layout: { + ...baseLayout(`${matrix.title}${context.label ? `: ${plotText(context.label)}` : ''}`), + xaxis: categoricalAxis('Target & query index', x), + yaxis: { title: { text: matrix.colorTitle }, automargin: true, gridcolor: '#e0e8f0', rangemode: 'tozero' }, + }, + }; + } + if (parsed.header[0] !== matrix.value || parsed.header.length < 2) throw new Error(`Unexpected ${type} matrix columns.`); + const x = parsed.header.slice(1).map(String), y = parsed.rows.map((row) => String(row[0])); + const z = parsed.rows.map((row) => row.slice(1).map(number)); + const target = context.target || 'Target', query = context.query || 'Query'; + return { + kind: 'matrix', context, + traces: [{ + type: 'heatmap', x, y, z, colorscale: matrix.colorscale, hoverongaps: false, + colorbar: { title: { text: matrix.colorTitle, side: 'right' } }, + hovertemplate: `${plotText(target)} %{y}
${plotText(query)} %{x}
Value %{z}`, + }], + layout: { + ...baseLayout(`${matrix.title}: ${plotText(target)} : ${plotText(query)}`), + xaxis: categoricalAxis(`${plotText(query)} index`, x), + yaxis: categoricalAxis(`${plotText(target)} index`, y), + }, + }; +} + +function button(text, className = '') { + const node = document.createElement('button'); node.type = 'button'; node.textContent = text; node.className = className; return node; +} + +export class AdditionalOutputView { + constructor(file, request, id, download) { + this.file = file; this.id = id; this.root = document.createElement('details'); this.root.className = 'output-file'; + const summary = document.createElement('summary'); summary.className = 'output-file-summary'; + const name = document.createElement('span'); name.className = 'output-file-name'; name.textContent = file.name; + const downloadButton = button('Download', 'text-button output-download'); + downloadButton.setAttribute('aria-label', `Download ${file.name}`); + downloadButton.addEventListener('click', (event) => { event.preventDefault(); event.stopPropagation(); download(); }); + const context = outputFileContext(file.name, request), description = document.createElement('span'); + description.className = 'output-file-context'; description.textContent = context.label ? `— ${context.label}` : ''; + summary.append(name, downloadButton, description); this.root.append(summary); + + const body = document.createElement('div'); body.className = 'output-file-body'; this.root.append(body); + const preview = document.createElement('pre'); preview.textContent = file.text.slice(0, 100000); + const contentPanel = document.createElement('section'); contentPanel.className = 'output-tab-panel'; contentPanel.append(preview); + if (file.text.length > 100000) { + const note = document.createElement('p'); note.textContent = 'Preview limited to 100,000 characters. Download contains the complete file.'; contentPanel.append(note); + } + + let spec = null, plotError = null; + try { spec = outputVisualization(file, request); } catch (error) { plotError = error; } + if (!spec && !plotError) { body.append(contentPanel); return; } + + const tabs = document.createElement('div'); tabs.className = 'output-tabs'; tabs.setAttribute('role', 'tablist'); tabs.setAttribute('aria-label', `${file.name} views`); + const visualizationTab = button('Visualization', 'output-tab'), contentTab = button('File Content', 'output-tab'); + const visualizationPanel = document.createElement('section'); visualizationPanel.className = 'output-tab-panel'; + visualizationTab.id = `${id}-visualization-tab`; visualizationPanel.id = `${id}-visualization-panel`; + contentTab.id = `${id}-content-tab`; contentPanel.id = `${id}-content-panel`; + for (const [tab, panel] of [[visualizationTab, visualizationPanel], [contentTab, contentPanel]]) { + tab.setAttribute('role', 'tab'); tab.setAttribute('aria-controls', panel.id); + panel.setAttribute('role', 'tabpanel'); panel.setAttribute('aria-labelledby', tab.id); + } + tabs.append(visualizationTab, contentTab); body.append(tabs, visualizationPanel, contentPanel); + this.tabs = [visualizationTab, contentTab]; this.panels = [visualizationPanel, contentPanel]; + this.selectTab = (index, focus = false) => { + this.tabs.forEach((tab, current) => { tab.setAttribute('aria-selected', String(current === index)); tab.tabIndex = current === index ? 0 : -1; this.panels[current].hidden = current !== index; }); + if (focus) this.tabs[index].focus(); + if (index === 0) this.render(); + }; + visualizationTab.addEventListener('click', () => this.selectTab(0)); contentTab.addEventListener('click', () => this.selectTab(1)); + tabs.addEventListener('keydown', (event) => { + if (!['ArrowLeft', 'ArrowRight', 'Home', 'End'].includes(event.key)) return; + const current = this.tabs.indexOf(document.activeElement); + const next = event.key === 'Home' ? 0 : event.key === 'End' ? 1 : (current + (event.key === 'ArrowRight' ? 1 : -1) + 2) % 2; + event.preventDefault(); this.selectTab(next, true); + }); + + const tools = document.createElement('div'); tools.className = 'plot-tools'; + const status = document.createElement('p'); status.className = 'output-plot-status'; status.setAttribute('role', 'status'); + visualizationPanel.append(tools, status); this.status = status; + if (plotError) { status.textContent = `Visualization unavailable: ${plotError.message}`; this.selectTab(0); return; } + const exportButton = button('Export PNG', 'secondary'); exportButton.disabled = true; + exportButton.addEventListener('click', async () => { + try { + await this.ready; + const image = await globalThis.Plotly.toImage(this.plot, { format: 'png', width: 1400, height: 850 }); + const encoded = image.slice(image.indexOf(',') + 1), bytes = Uint8Array.from(atob(encoded), (character) => character.charCodeAt(0)); + const url = URL.createObjectURL(new Blob([bytes], { type: 'image/png' })); + const link = document.createElement('a'); link.href = url; link.download = file.name.replace(/\.csv$/i, '.png'); + document.body.append(link); link.click(); link.remove(); setTimeout(() => URL.revokeObjectURL(url), 1000); + } catch (error) { status.textContent = `PNG export failed: ${error.message}`; } + }); + tools.append(exportButton); this.exportButton = exportButton; + this.plot = document.createElement('div'); this.plot.className = 'output-plot'; visualizationPanel.append(this.plot); this.spec = spec; + this.root.addEventListener('toggle', () => { if (this.root.open && !visualizationPanel.hidden) this.render(); }); + this.selectTab(0); + } + + render() { + if (!this.spec || this.rendered || !this.root.open) return; + if (!globalThis.Plotly?.newPlot) { this.status.textContent = 'Visualization unavailable: Plotly did not load.'; return; } + this.rendered = true; this.status.textContent = 'Rendering visualization…'; this.plot.setAttribute('aria-busy', 'true'); + this.ready = Promise.resolve(globalThis.Plotly.newPlot(this.plot, this.spec.traces, this.spec.layout, { + responsive: true, displaylogo: false, scrollZoom: false, + modeBarButtonsToRemove: ['sendDataToCloud', 'lasso2d', 'select2d'], + })).then(() => { + this.plot.removeAttribute('aria-busy'); this.status.textContent = ''; this.exportButton.disabled = false; + }).catch((error) => { this.plot.removeAttribute('aria-busy'); this.status.textContent = `Visualization unavailable: ${error.message}`; }); + } + + resize() { + if (this.rendered && this.root.open && !this.panels?.[0].hidden) requestAnimationFrame(() => globalThis.Plotly?.Plots?.resize(this.plot)); + } + + destroy() { + if (this.rendered) globalThis.Plotly?.purge?.(this.plot); + } +} diff --git a/gui/sessions.js b/gui/sessions.js index 71b712d0..ed3c873a 100644 --- a/gui/sessions.js +++ b/gui/sessions.js @@ -1,6 +1,7 @@ import { ResultsView, downloadBlob } from './results.js'; import { serializeParameters, importParameters } from './parameter-file.js'; import { zipFiles } from './archive.js'; +import { AdditionalOutputView } from './output-visualization.js'; // Sessions live only in this page. Each owns a JSON snapshot and its own view; // editing the form or exploring another session cannot change an earlier run. @@ -25,7 +26,10 @@ export class SessionsView { // Unload third-party viewers while folded. The table selection is retained // and can be visualized again without recomputing the prediction. if (!expanded) session.view.visualization.clear(); - else if (session.view.selected) session.view.visualization.show(session.view.selected, session.view.request); + else { + if (session.view.selected) session.view.visualization.show(session.view.selected, session.view.request); + for (const fileView of session.fileViews) fileView.resize(); + } } select(session, restore = true) { @@ -46,7 +50,7 @@ export class SessionsView { const id = `session-${this.nextNumber}`, task = request.task === 'evaluation' ? 'Evaluation' : 'Prediction'; const session = { id, name: `${task} ${this.nextNumber}`, parameterJson, root, - panel: find('panel'), toggle: find('toggle'), view: new ResultsView(find('results-view')), + panel: find('panel'), toggle: find('toggle'), view: new ResultsView(find('results-view')), fileViews: [], }; const count = session.view.show(result.csv, result.csvColumns, request); const summary = count ? `${task} complete: ${count} interaction${count === 1 ? '' : 's'}.` : request.task === 'prediction' && request.parameters.outNumber === 0 ? 'Accessibility computation complete. No interaction rows requested.' : 'No favorable interactions found with these sequences and settings.'; @@ -94,16 +98,11 @@ export class SessionsView { downloadBlob(`${filename}.zip`, new Blob([zipFiles(files)], { type: 'application/zip' })); } catch (error) { this.reportError(new Error(`ZIP download failed: ${error.message}`)); } }); - for (const file of result.files) { - const details = document.createElement('details'), label = document.createElement('summary'); label.textContent = file.name; - const preview = document.createElement('pre'); preview.textContent = file.text.slice(0, 100000); - const download = document.createElement('button'); download.type = 'button'; download.className = 'secondary'; download.textContent = 'Download file'; - download.addEventListener('click', () => downloadBlob(file.name, new Blob([file.text], { type: 'text/plain;charset=utf-8' }))); - details.append(label, download, preview); - if (file.text.length > 100000) { - const note = document.createElement('p'); note.textContent = 'Preview limited to 100,000 characters. Download contains the complete file.'; details.append(note); - } - find('file-list').append(details); + for (const [index, file] of result.files.entries()) { + const fileView = new AdditionalOutputView(file, request, `${id}-file-${index}`, () => { + downloadBlob(file.name, new Blob([file.text], { type: 'text/plain;charset=utf-8' })); + }); + session.fileViews.push(fileView); find('file-list').append(fileView.root); } find('output-files').hidden = !result.files.length; find('diagnostic-text').textContent = result.diagnostics; find('diagnostics').hidden = !result.diagnostics; @@ -111,7 +110,9 @@ export class SessionsView { find('delete').addEventListener('click', () => { const entries = [...this.entries.values()], index = entries.indexOf(session); const next = entries[index + 1] ?? entries[index - 1]; - session.view.clear(); root.remove(); this.entries.delete(id); + session.view.clear(); + for (const fileView of session.fileViews) fileView.destroy(); + root.remove(); this.entries.delete(id); // Deleting output does not silently overwrite an edited form. if (this.selected === id) this.selected = null; this.announce(`${session.name} deleted. ${this.entries.size} session${this.entries.size === 1 ? '' : 's'} remaining.`); diff --git a/gui/styles.css b/gui/styles.css index a87f949f..15bd6d75 100644 --- a/gui/styles.css +++ b/gui/styles.css @@ -573,6 +573,95 @@ tbody tr.selected { background:var(--table-selection); } padding-top:12px; } +.output-file-summary { + display:flex; + align-items:center; + flex-wrap:wrap; + gap:6px 10px; + min-height:2.2rem; + color:var(--brand-blue-dark); + font-weight:600; + list-style:none; +} + +.output-file-summary::before { + content:'▸'; + width:.8rem; +} + +.output-file[open] > .output-file-summary::before { + content:'▾'; +} + +.output-file-name { + overflow-wrap:anywhere; +} + +.output-file-context { + color:var(--muted); + font-size:.85rem; + font-weight:400; +} + +.output-download { + padding:.1rem .35rem; +} + +.output-file-body { + padding:.8rem 0 .25rem 1.15rem; +} + +.output-tabs { + display:flex; + gap:4px; + border-bottom:1px solid var(--border); +} + +.output-tab { + border:0; + border-bottom:3px solid transparent; + border-radius:0; + padding:.5rem .8rem; + color:var(--brand-blue-dark); + background:transparent; +} + +.output-tab[aria-selected=true] { + border-bottom-color:var(--brand-blue); + background:var(--brand-blue-soft); +} + +.output-tab-panel { + padding-top:12px; + min-width:0; +} + +.plot-tools { + display:flex; + justify-content:flex-end; + min-height:2.6rem; +} + +.plot-tools button { + font-size:.85rem; + padding:.35rem .7rem; +} + +.output-plot { + width:100%; + min-height:420px; +} + +.output-plot-status { + max-width:none; + color:var(--muted); + font-size:.85rem; +} + +.output-tab-panel pre { + margin:0; +} + pre { white-space:pre; overflow:auto; @@ -717,6 +806,9 @@ dialog::backdrop { .group-body { padding:14px; } + .output-file-body { + padding-left:0; + } } @media(prefers-reduced-motion:reduce) { diff --git a/gui/tests/output-visualization.test.mjs b/gui/tests/output-visualization.test.mjs new file mode 100644 index 00000000..d8aa08f8 --- /dev/null +++ b/gui/tests/output-visualization.test.mjs @@ -0,0 +1,63 @@ +import { test } from 'node:test'; +import assert from 'node:assert/strict'; +import { outputFileContext, outputVisualization } from '../output-visualization.js'; + +const request = { + target: { records: [{ id: 'target-1' }, { id: 'target-2' }] }, + query: { records: [{ id: 'query-1' }, { id: 'query-2' }] }, +}; + +test('profile plots retain signed categorical indices and sequence names', () => { + const spec = outputVisualization({ + name: 'qMinE-t1q2.csv', + text: 'idx;query-2;minE\n-2;G;-3.2\n-1;C;NA\n1;A;-2.1\n', + }, request); + assert.equal(spec.kind, 'profile'); + assert.deepEqual(spec.traces[0].x, ['-2', '-1', '1']); + assert.deepEqual(spec.traces[0].y, [-3.2, null, -2.1]); + assert.equal(spec.layout.xaxis.type, 'category'); + assert.deepEqual(spec.layout.xaxis.categoryarray, ['-2', '-1', '1']); + assert.match(spec.layout.title.text, /query-2/); + assert.equal(spec.context.label, 'target-1 : query-2'); +}); + +test('pair energy and probability matrices use literal category axes', () => { + const energy = outputVisualization({ + name: 'pMinE-t2q1.csv', + text: 'minE;A_-1;C_1\nG_5;-4.2;NA\nU_6;-2.0;-1.5\n', + }, request); + assert.equal(energy.kind, 'matrix'); + assert.deepEqual(energy.traces[0].z, [[-4.2, null], [-2, -1.5]]); + assert.equal(energy.layout.xaxis.type, 'category'); + assert.equal(energy.layout.yaxis.type, 'category'); + assert.match(energy.layout.title.text, /target-2 : query-1/); + + const spots = outputVisualization({ + name: 'spotProb-t1q2.csv', + text: 'spotProb;A_-1;C_1\nG_5;0.1;0.2\n', + }, request); + assert.equal(spots.kind, 'matrix'); + assert.equal(spots.traces[0].type, 'heatmap'); + assert.deepEqual(spots.layout.xaxis.categoryarray, ['A_-1', 'C_1']); +}); + +test('selected spot probabilities use a categorical bar plot', () => { + const onePair = { target: { records: [{ id: 'target' }] }, query: { records: [{ id: 'query' }] } }; + const spec = outputVisualization({ name: 'spotProb.csv', text: 'spot;probability\n0&0;0.4\n5&-2;0.6\n' }, onePair); + assert.equal(spec.kind, 'spots'); + assert.equal(spec.traces[0].type, 'bar'); + assert.deepEqual(spec.traces[0].x, ['0&0', '5&-2']); + assert.equal(spec.context.label, 'target : query'); +}); + +test('output headers identify the sequence or sequence pair they cover', () => { + assert.equal(outputFileContext('tMinE-t2q1.csv', request).label, 'target-2 : query-1'); + assert.equal(outputFileContext('qAcc-s2.csv', request).label, 'query-2'); + assert.equal(outputFileContext('intarna-detailed.txt', request).label, ''); +}); + +test('non-plot files are ignored and malformed plot data fails clearly', () => { + assert.equal(outputVisualization({ name: 'qAcc.csv', text: '# accessibility' }, request), null); + assert.throws(() => outputVisualization({ name: 'qMinE-t1q1.csv', text: 'idx;query-1;wrong\n1;A;2\n' }, request), /Unexpected qMinE/); + assert.throws(() => outputVisualization({ name: 'pMinE-t1q1.csv', text: 'minE;A_1\nG_1;not-a-number\n' }, request), /non-numeric/); +}); diff --git a/gui/vendor/README.md b/gui/vendor/README.md new file mode 100644 index 00000000..1789b6db --- /dev/null +++ b/gui/vendor/README.md @@ -0,0 +1,16 @@ +# Plotly browser bundle + +`plotly-cartesian.min.js` is the unmodified browser bundle from +`plotly.js-cartesian-dist-min` 4.1.2 (MIT). It provides the scatter, bar and +heatmap traces used for additional IntaRNA output visualizations. +`plotly.css` is a static copy of its runtime plot/modebar rules. Plotly normally +inserts those rules with CSSOM; the bundle's supported `no-inline-styles` sentinel +suppresses that insertion while the same-origin copy retains the GUI's strict +`style-src 'self'` content-security policy. + +- npm integrity: `sha512-3UkyAT7/U8f3sOLavLnUjA6mqFmnqEe246GZhxT0J3TT9oZ0mh6SgwsL1yo/3/4xfmRSDFdGOxe+EsvT2XiE0g==` +- bundle SHA-256: `aaf12ff1d4671f7e93f6df4291651ab4ca6b76c0ea5f1576ec1030e3c2819a20` +- static CSS SHA-256: `3bcf2679b557067d8a3492b74092e946544d1cb8b2a72f278bcba95df59afd33` +- source: + +Keep the adjacent `plotly-LICENSE.txt` when updating the bundle. diff --git a/gui/vendor/plotly-LICENSE.txt b/gui/vendor/plotly-LICENSE.txt new file mode 100644 index 00000000..13ffac3c --- /dev/null +++ b/gui/vendor/plotly-LICENSE.txt @@ -0,0 +1,21 @@ +MIT License + +Copyright (c) 2016-2024 Plotly Technologies Inc. + +Permission is hereby granted, free of charge, to any person obtaining a copy +of this software and associated documentation files (the "Software"), to deal +in the Software without restriction, including without limitation the rights +to use, copy, modify, merge, publish, distribute, sublicense, and/or sell +copies of the Software, and to permit persons to whom the Software is +furnished to do so, subject to the following conditions: + +The above copyright notice and this permission notice shall be included in +all copies or substantial portions of the Software. + +THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR +IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, +FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE +AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER +LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, +OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN +THE SOFTWARE. diff --git a/gui/vendor/plotly-cartesian.min.js b/gui/vendor/plotly-cartesian.min.js new file mode 100644 index 00000000..11ced8ef --- /dev/null +++ b/gui/vendor/plotly-cartesian.min.js @@ -0,0 +1,149 @@ +/** +* plotly.js (cartesian - minified) v4.1.2 +* Copyright 2012-2026, Plotly, Inc. +* All rights reserved. +* Licensed under the MIT license +*/ +( + function(root, factory) { + if (typeof module === "object" && module.exports) { + module.exports = factory(); + } else { + root.moduleName = factory(); + } +} (typeof self !== "undefined" ? self : this, () => { +"use strict";var Plotly=(()=>{var jce=Object.create;var 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I?(I=1/I,e[0]=(l*N-s*R+u*P)*I,e[1]=(n*R-a*N-i*P)*I,e[2]=(y*T-m*k+b*_)*I,e[3]=(v*k-c*T-d*_)*I,e[4]=(s*E-o*N-u*C)*I,e[5]=(t*N-n*E+i*C)*I,e[6]=(m*x-p*T-b*w)*I,e[7]=(f*T-v*x+d*w)*I,e[8]=(o*R-l*E+u*q)*I,e[9]=(a*E-t*R-i*q)*I,e[10]=(p*k-y*x+b*A)*I,e[11]=(c*x-f*k-d*A)*I,e[12]=(l*C-o*P-s*q)*I,e[13]=(t*P-a*C+n*q)*I,e[14]=(y*w-p*_-m*A)*I,e[15]=(f*_-c*w+v*A)*I,e):null}});var ZC=z((Zje,XC)=>{XC.exports=_pe;function _pe(e,r){var t=r[0],a=r[1],n=r[2],i=r[3],o=r[4],l=r[5],s=r[6],u=r[7],f=r[8],c=r[9],v=r[10],d=r[11],p=r[12],y=r[13],m=r[14],b=r[15];return e[0]=l*(v*b-d*m)-c*(s*b-u*m)+y*(s*d-u*v),e[1]=-(a*(v*b-d*m)-c*(n*b-i*m)+y*(n*d-i*v)),e[2]=a*(s*b-u*m)-l*(n*b-i*m)+y*(n*u-i*s),e[3]=-(a*(s*d-u*v)-l*(n*d-i*v)+c*(n*u-i*s)),e[4]=-(o*(v*b-d*m)-f*(s*b-u*m)+p*(s*d-u*v)),e[5]=t*(v*b-d*m)-f*(n*b-i*m)+p*(n*d-i*v),e[6]=-(t*(s*b-u*m)-o*(n*b-i*m)+p*(n*u-i*s)),e[7]=t*(s*d-u*v)-o*(n*d-i*v)+f*(n*u-i*s),e[8]=o*(c*b-d*y)-f*(l*b-u*y)+p*(l*d-u*c),e[9]=-(t*(c*b-d*y)-f*(a*b-i*y)+p*(a*d-i*c)),e[10]=t*(l*b-u*y)-o*(a*b-i*y)+p*(a*u-i*l),e[11]=-(t*(l*d-u*c)-o*(a*d-i*c)+f*(a*u-i*l)),e[12]=-(o*(c*m-v*y)-f*(l*m-s*y)+p*(l*v-s*c)),e[13]=t*(c*m-v*y)-f*(a*m-n*y)+p*(a*v-n*c),e[14]=-(t*(l*m-s*y)-o*(a*m-n*y)+p*(a*s-n*l)),e[15]=t*(l*v-s*c)-o*(a*v-n*c)+f*(a*s-n*l),e}});var JC=z(($je,$C)=>{$C.exports=wpe;function wpe(e){var r=e[0],t=e[1],a=e[2],n=e[3],i=e[4],o=e[5],l=e[6],s=e[7],u=e[8],f=e[9],c=e[10],v=e[11],d=e[12],p=e[13],y=e[14],m=e[15],b=r*o-t*i,A=r*l-a*i,w=r*s-n*i,x=t*l-a*o,_=t*s-n*o,k=a*s-n*l,T=u*p-f*d,q=u*y-c*d,C=u*m-v*d,E=f*y-c*p,P=f*m-v*p,R=c*m-v*y;return b*R-A*P+w*E+x*C-_*q+k*T}});var QC=z((Jje,KC)=>{KC.exports=Ape;function Ape(e,r,t){var a=r[0],n=r[1],i=r[2],o=r[3],l=r[4],s=r[5],u=r[6],f=r[7],c=r[8],v=r[9],d=r[10],p=r[11],y=r[12],m=r[13],b=r[14],A=r[15],w=t[0],x=t[1],_=t[2],k=t[3];return e[0]=w*a+x*l+_*c+k*y,e[1]=w*n+x*s+_*v+k*m,e[2]=w*i+x*u+_*d+k*b,e[3]=w*o+x*f+_*p+k*A,w=t[4],x=t[5],_=t[6],k=t[7],e[4]=w*a+x*l+_*c+k*y,e[5]=w*n+x*s+_*v+k*m,e[6]=w*i+x*u+_*d+k*b,e[7]=w*o+x*f+_*p+k*A,w=t[8],x=t[9],_=t[10],k=t[11],e[8]=w*a+x*l+_*c+k*y,e[9]=w*n+x*s+_*v+k*m,e[10]=w*i+x*u+_*d+k*b,e[11]=w*o+x*f+_*p+k*A,w=t[12],x=t[13],_=t[14],k=t[15],e[12]=w*a+x*l+_*c+k*y,e[13]=w*n+x*s+_*v+k*m,e[14]=w*i+x*u+_*d+k*b,e[15]=w*o+x*f+_*p+k*A,e}});var rD=z((Kje,eD)=>{eD.exports=Tpe;function Tpe(e,r,t){var a=t[0],n=t[1],i=t[2],o,l,s,u,f,c,v,d,p,y,m,b;return r===e?(e[12]=r[0]*a+r[4]*n+r[8]*i+r[12],e[13]=r[1]*a+r[5]*n+r[9]*i+r[13],e[14]=r[2]*a+r[6]*n+r[10]*i+r[14],e[15]=r[3]*a+r[7]*n+r[11]*i+r[15]):(o=r[0],l=r[1],s=r[2],u=r[3],f=r[4],c=r[5],v=r[6],d=r[7],p=r[8],y=r[9],m=r[10],b=r[11],e[0]=o,e[1]=l,e[2]=s,e[3]=u,e[4]=f,e[5]=c,e[6]=v,e[7]=d,e[8]=p,e[9]=y,e[10]=m,e[11]=b,e[12]=o*a+f*n+p*i+r[12],e[13]=l*a+c*n+y*i+r[13],e[14]=s*a+v*n+m*i+r[14],e[15]=u*a+d*n+b*i+r[15]),e}});var aD=z((Qje,tD)=>{tD.exports=Mpe;function Mpe(e,r,t){var a=t[0],n=t[1],i=t[2];return e[0]=r[0]*a,e[1]=r[1]*a,e[2]=r[2]*a,e[3]=r[3]*a,e[4]=r[4]*n,e[5]=r[5]*n,e[6]=r[6]*n,e[7]=r[7]*n,e[8]=r[8]*i,e[9]=r[9]*i,e[10]=r[10]*i,e[11]=r[11]*i,e[12]=r[12],e[13]=r[13],e[14]=r[14],e[15]=r[15],e}});var iD=z((eWe,nD)=>{nD.exports=kpe;function kpe(e,r,t,a){var n=a[0],i=a[1],o=a[2],l=Math.sqrt(n*n+i*i+o*o),s,u,f,c,v,d,p,y,m,b,A,w,x,_,k,T,q,C,E,P,R,N,I,O;return Math.abs(l)<1e-6?null:(l=1/l,n*=l,i*=l,o*=l,s=Math.sin(t),u=Math.cos(t),f=1-u,c=r[0],v=r[1],d=r[2],p=r[3],y=r[4],m=r[5],b=r[6],A=r[7],w=r[8],x=r[9],_=r[10],k=r[11],T=n*n*f+u,q=i*n*f+o*s,C=o*n*f-i*s,E=n*i*f-o*s,P=i*i*f+u,R=o*i*f+n*s,N=n*o*f+i*s,I=i*o*f-n*s,O=o*o*f+u,e[0]=c*T+y*q+w*C,e[1]=v*T+m*q+x*C,e[2]=d*T+b*q+_*C,e[3]=p*T+A*q+k*C,e[4]=c*E+y*P+w*R,e[5]=v*E+m*P+x*R,e[6]=d*E+b*P+_*R,e[7]=p*E+A*P+k*R,e[8]=c*N+y*I+w*O,e[9]=v*N+m*I+x*O,e[10]=d*N+b*I+_*O,e[11]=p*N+A*I+k*O,r!==e&&(e[12]=r[12],e[13]=r[13],e[14]=r[14],e[15]=r[15]),e)}});var lD=z((rWe,oD)=>{oD.exports=Spe;function Spe(e,r,t){var a=Math.sin(t),n=Math.cos(t),i=r[4],o=r[5],l=r[6],s=r[7],u=r[8],f=r[9],c=r[10],v=r[11];return r!==e&&(e[0]=r[0],e[1]=r[1],e[2]=r[2],e[3]=r[3],e[12]=r[12],e[13]=r[13],e[14]=r[14],e[15]=r[15]),e[4]=i*n+u*a,e[5]=o*n+f*a,e[6]=l*n+c*a,e[7]=s*n+v*a,e[8]=u*n-i*a,e[9]=f*n-o*a,e[10]=c*n-l*a,e[11]=v*n-s*a,e}});var uD=z((tWe,sD)=>{sD.exports=qpe;function qpe(e,r,t){var a=Math.sin(t),n=Math.cos(t),i=r[0],o=r[1],l=r[2],s=r[3],u=r[8],f=r[9],c=r[10],v=r[11];return r!==e&&(e[4]=r[4],e[5]=r[5],e[6]=r[6],e[7]=r[7],e[12]=r[12],e[13]=r[13],e[14]=r[14],e[15]=r[15]),e[0]=i*n-u*a,e[1]=o*n-f*a,e[2]=l*n-c*a,e[3]=s*n-v*a,e[8]=i*a+u*n,e[9]=o*a+f*n,e[10]=l*a+c*n,e[11]=s*a+v*n,e}});var cD=z((aWe,fD)=>{fD.exports=Lpe;function Lpe(e,r,t){var a=Math.sin(t),n=Math.cos(t),i=r[0],o=r[1],l=r[2],s=r[3],u=r[4],f=r[5],c=r[6],v=r[7];return r!==e&&(e[8]=r[8],e[9]=r[9],e[10]=r[10],e[11]=r[11],e[12]=r[12],e[13]=r[13],e[14]=r[14],e[15]=r[15]),e[0]=i*n+u*a,e[1]=o*n+f*a,e[2]=l*n+c*a,e[3]=s*n+v*a,e[4]=u*n-i*a,e[5]=f*n-o*a,e[6]=c*n-l*a,e[7]=v*n-s*a,e}});var hD=z((nWe,vD)=>{vD.exports=Cpe;function Cpe(e,r,t){var a,n,i,o=t[0],l=t[1],s=t[2],u=Math.sqrt(o*o+l*l+s*s);return Math.abs(u)<1e-6?null:(u=1/u,o*=u,l*=u,s*=u,a=Math.sin(r),n=Math.cos(r),i=1-n,e[0]=o*o*i+n,e[1]=l*o*i+s*a,e[2]=s*o*i-l*a,e[3]=0,e[4]=o*l*i-s*a,e[5]=l*l*i+n,e[6]=s*l*i+o*a,e[7]=0,e[8]=o*s*i+l*a,e[9]=l*s*i-o*a,e[10]=s*s*i+n,e[11]=0,e[12]=0,e[13]=0,e[14]=0,e[15]=1,e)}});var pD=z((iWe,dD)=>{dD.exports=Dpe;function Dpe(e,r,t){var a=r[0],n=r[1],i=r[2],o=r[3],l=a+a,s=n+n,u=i+i,f=a*l,c=a*s,v=a*u,d=n*s,p=n*u,y=i*u,m=o*l,b=o*s,A=o*u;return e[0]=1-(d+y),e[1]=c+A,e[2]=v-b,e[3]=0,e[4]=c-A,e[5]=1-(f+y),e[6]=p+m,e[7]=0,e[8]=v+b,e[9]=p-m,e[10]=1-(f+d),e[11]=0,e[12]=t[0],e[13]=t[1],e[14]=t[2],e[15]=1,e}});var yD=z((oWe,mD)=>{mD.exports=Epe;function Epe(e,r){return e[0]=r[0],e[1]=0,e[2]=0,e[3]=0,e[4]=0,e[5]=r[1],e[6]=0,e[7]=0,e[8]=0,e[9]=0,e[10]=r[2],e[11]=0,e[12]=0,e[13]=0,e[14]=0,e[15]=1,e}});var bD=z((lWe,gD)=>{gD.exports=Ppe;function Ppe(e,r){return e[0]=1,e[1]=0,e[2]=0,e[3]=0,e[4]=0,e[5]=1,e[6]=0,e[7]=0,e[8]=0,e[9]=0,e[10]=1,e[11]=0,e[12]=r[0],e[13]=r[1],e[14]=r[2],e[15]=1,e}});var _D=z((sWe,xD)=>{xD.exports=Rpe;function Rpe(e,r){var t=Math.sin(r),a=Math.cos(r);return e[0]=1,e[1]=0,e[2]=0,e[3]=0,e[4]=0,e[5]=a,e[6]=t,e[7]=0,e[8]=0,e[9]=-t,e[10]=a,e[11]=0,e[12]=0,e[13]=0,e[14]=0,e[15]=1,e}});var AD=z((uWe,wD)=>{wD.exports=Fpe;function Fpe(e,r){var t=Math.sin(r),a=Math.cos(r);return e[0]=a,e[1]=0,e[2]=-t,e[3]=0,e[4]=0,e[5]=1,e[6]=0,e[7]=0,e[8]=t,e[9]=0,e[10]=a,e[11]=0,e[12]=0,e[13]=0,e[14]=0,e[15]=1,e}});var MD=z((fWe,TD)=>{TD.exports=zpe;function zpe(e,r){var t=Math.sin(r),a=Math.cos(r);return e[0]=a,e[1]=t,e[2]=0,e[3]=0,e[4]=-t,e[5]=a,e[6]=0,e[7]=0,e[8]=0,e[9]=0,e[10]=1,e[11]=0,e[12]=0,e[13]=0,e[14]=0,e[15]=1,e}});var SD=z((cWe,kD)=>{kD.exports=Npe;function Npe(e,r){var t=r[0],a=r[1],n=r[2],i=r[3],o=t+t,l=a+a,s=n+n,u=t*o,f=a*o,c=a*l,v=n*o,d=n*l,p=n*s,y=i*o,m=i*l,b=i*s;return e[0]=1-c-p,e[1]=f+b,e[2]=v-m,e[3]=0,e[4]=f-b,e[5]=1-u-p,e[6]=d+y,e[7]=0,e[8]=v+m,e[9]=d-y,e[10]=1-u-c,e[11]=0,e[12]=0,e[13]=0,e[14]=0,e[15]=1,e}});var LD=z((vWe,qD)=>{qD.exports=Ipe;function 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T=s>m,q=$t.barLength+2*$t.barPad,C=$t.barWidth+2*$t.barPad,E=l,P=u+f;P+C>o&&(P=o-C);var R=this.container.selectAll("rect.scrollbar-horizontal").data(T?[0]:[]);R.exit().on(".drag",null).remove(),R.enter().append("rect").classed("scrollbar-horizontal",!0).call(cj.fill,$t.barColor),T?(this.hbar=R.attr({rx:$t.barRadius,ry:$t.barRadius,x:E,y:P,width:q,height:C}),this._hbarXMin=E+q/2,this._hbarTranslateMax=m-q):(delete this.hbar,delete this._hbarXMin,delete this._hbarTranslateMax);var N=f>b,I=$t.barWidth+2*$t.barPad,O=$t.barLength+2*$t.barPad,U=l+s,Y=u;U+I>i&&(U=i-I);var G=this.container.selectAll("rect.scrollbar-vertical").data(N?[0]:[]);G.exit().on(".drag",null).remove(),G.enter().append("rect").classed("scrollbar-vertical",!0).call(cj.fill,$t.barColor),N?(this.vbar=G.attr({rx:$t.barRadius,ry:$t.barRadius,x:U,y:Y,width:I,height:O}),this._vbarYMin=Y+O/2,this._vbarTranslateMax=b-O):(delete this.vbar,delete this._vbarYMin,delete this._vbarTranslateMax);var V=this.id,W=A-.5,j=N?w+I+.5:w+.5,J=x-.5,te=T?_+C+.5:_+.5,ae=n._topdefs.selectAll("#"+V).data(T||N?[0]:[]);if(ae.exit().remove(),ae.enter().append("clipPath").attr("id",V).append("rect"),T||N?(this._clipRect=ae.select("rect").attr({x:Math.floor(W),y:Math.floor(J),width:Math.ceil(j)-Math.floor(W),height:Math.ceil(te)-Math.floor(J)}),this.container.call(N0.setClipUrl,V,this.gd),this.bg.attr({x:l,y:u,width:s,height:f})):(this.bg.attr({width:0,height:0}),this.container.on("wheel",null).on(".drag",null).call(N0.setClipUrl,null),delete this._clipRect),T||N){var se=Uo.behavior.drag().on("dragstart",function(){Uo.event.sourceEvent.preventDefault()}).on("drag",this._onBoxDrag.bind(this));this.container.on("wheel",null).on("wheel",this._onBoxWheel.bind(this)).on(".drag",null).call(se);var 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r=this.translateX,t=this.translateY;this.hbar&&(r+=Uo.event.deltaY),this.vbar&&(t+=Uo.event.deltaY),this.setTranslate(r,t)};$t.prototype._onBarDrag=function(){var r=this.translateX,t=this.translateY;if(this.hbar){var a=r+this._hbarXMin,n=a+this._hbarTranslateMax,i=Dg.constrain(Uo.event.x,a,n),o=(i-a)/(n-a),l=this.position.w-this._box.w;r=o*l}if(this.vbar){var s=t+this._vbarYMin,u=s+this._vbarTranslateMax,f=Dg.constrain(Uo.event.y,s,u),c=(f-s)/(u-s),v=this.position.h-this._box.h;t=c*v}this.setTranslate(r,t)};$t.prototype.setTranslate=function(r,t){var a=this.position.w-this._box.w,n=this.position.h-this._box.h;if(r=Dg.constrain(r||0,0,a),t=Dg.constrain(t||0,0,n),this.translateX=r,this.translateY=t,this.container.call(N0.setTranslate,this._box.l-this.position.l-r,this._box.t-this.position.t-t),this._clipRect&&this._clipRect.attr({x:Math.floor(this.position.l+r-.5),y:Math.floor(this.position.t+t-.5)}),this.hbar){var 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kj=Ca(),dSe=qp(),pSe=Mt().extendDeepAll,mSe=qo().overrideAll,ySe=Ah(),Sj=Ct().templatedArray,Cf=(Jd(),ze($d)),gSe=Sj("step",{visible:{valType:"boolean",dflt:!0},method:{valType:"enumerated",values:["restyle","relayout","animate","update","skip"],dflt:"restyle"},args:{valType:"info_array",freeLength:!0,items:[{valType:"any"},{valType:"any"},{valType:"any"}]},label:{valType:"string"},value:{valType:"string"},execute:{valType:"boolean",dflt:!0}});qj.exports=mSe(Sj("slider",{visible:{valType:"boolean",dflt:!0},active:{valType:"number",min:0,dflt:0},steps:gSe,lenmode:{valType:"enumerated",values:["fraction","pixels"],dflt:"fraction"},len:{valType:"number",min:0,dflt:1},x:{valType:"number",min:-2,max:3,dflt:0},pad:pSe(dSe({editType:"arraydraw"}),{},{t:{dflt:20}}),xanchor:{valType:"enumerated",values:["auto","left","center","right"],dflt:"left"},y:{valType:"number",min:-2,max:3,dflt:0},yanchor:{valType:"enumerated",values:["auto","top","middle","bottom"],dflt:"top"},transition:{duration:{valType:"number",min:0,dflt:150},easing:{valType:"enumerated",values:ySe.transition.easing.values,dflt:"cubic-in-out"}},currentvalue:{visible:{valType:"boolean",dflt:!0},xanchor:{valType:"enumerated",values:["left","center","right"],dflt:"left"},offset:{valType:"number",dflt:10},prefix:{valType:"string"},suffix:{valType:"string"},font:kj({})},font:kj({}),activebgcolor:{valType:"color",dflt:Cf.gripBgActiveColor},bgcolor:{valType:"color",dflt:Cf.railBgColor},bordercolor:{valType:"color",dflt:Cf.railBorderColor},borderwidth:{valType:"number",min:0,dflt:Cf.railBorderWidth},ticklen:{valType:"number",min:0,dflt:Cf.tickLength},tickcolor:{valType:"color",dflt:Cf.tickColor},tickwidth:{valType:"number",min:0,dflt:1},minorticklen:{valType:"number",min:0,dflt:Cf.minorTickLength}}),"arraydraw","from-root")});var Ej=z((aKe,Dj)=>{"use strict";var O0=ke(),Lj=Po(),Cj=z8(),bSe=(Jd(),ze($d)),xSe=bSe.name,_Se=Cj.steps;Dj.exports=function(r,t){Lj(r,t,{name:xSe,handleItemDefaults:wSe})};function wSe(e,r,t){function a(c,v){return O0.coerce(e,r,Cj,c,v)}for(var n=Lj(e,r,{name:"steps",handleItemDefaults:ASe}),i=0,o=0;o{"use strict";var Go=Pr(),Pg=ma(),Ks=qr(),Yo=Jr(),qi=ke(),TSe=qi.strTranslate,Kd=Fa(),MSe=Ct().arrayEditor,Hr=(Jd(),ze($d)),B8=(on(),ze(nn)),Fj=B8.LINE_SPACING,N8=B8.FROM_TL,I8=B8.FROM_BR;Hj.exports=function(r){var t=r._context.staticPlot,a=r._fullLayout,n=kSe(a,r),i=a._infolayer.selectAll("g."+Hr.containerClassName).data(n.length>0?[0]:[]);i.enter().append("g").classed(Hr.containerClassName,!0).style("cursor",t?null:"ew-resize");function o(f){f._commandObserver&&(f._commandObserver.remove(),delete f._commandObserver),Pg.autoMargin(r,zj(f))}if(i.exit().each(function(){Go.select(this).selectAll("g."+Hr.groupClassName).each(o)}).remove(),n.length!==0){var l=i.selectAll("g."+Hr.groupClassName).data(n,SSe);l.enter().append("g").classed(Hr.groupClassName,!0),l.exit().each(o).remove();for(var s=0;s0&&(l=l.transition().duration(r.transition.duration).ease(r.transition.easing)),l.attr("transform",TSe(o-Hr.gripWidth*.5,r._dims.currentValueTotalHeight))}}function O8(e,r){var t=e._dims;return t.inputAreaStart+Hr.stepInset+(t.inputAreaLength-2*Hr.stepInset)*Math.min(1,Math.max(0,r))}function Rj(e,r){var t=e._dims;return Math.min(1,Math.max(0,(r-Hr.stepInset-t.inputAreaStart)/(t.inputAreaLength-2*Hr.stepInset-2*t.inputAreaStart)))}function RSe(e,r,t){var a=t._dims,n=qi.ensureSingle(e,"rect",Hr.railTouchRectClass,function(i){i.call(Bj,r,e,t).style("pointer-events","all")});n.attr({width:a.inputAreaLength,height:Math.max(a.inputAreaWidth,Hr.tickOffset+t.ticklen+a.labelHeight)}).call(Ks.fill,t.bgcolor).attr("opacity",0),Yo.setTranslate(n,0,a.currentValueTotalHeight)}function FSe(e,r){var t=r._dims,a=t.inputAreaLength-Hr.railInset*2,n=qi.ensureSingle(e,"rect",Hr.railRectClass);n.attr({width:a,height:Hr.railWidth,rx:Hr.railRadius,ry:Hr.railRadius,"shape-rendering":"crispEdges"}).call(Ks.stroke,r.bordercolor).call(Ks.fill,r.bgcolor).style("stroke-width",r.borderwidth+"px"),Yo.setTranslate(n,Hr.railInset,(t.inputAreaWidth-Hr.railWidth)*.5+t.currentValueTotalHeight)}});var Yj=z((iKe,Gj)=>{"use strict";var zSe=(Jd(),ze($d));Gj.exports={moduleType:"component",name:zSe.name,layoutAttributes:z8(),supplyLayoutDefaults:Ej(),draw:Uj()}});var Fg=z((oKe,jj)=>{"use strict";var Vj=Ii();jj.exports={bgcolor:{valType:"color",dflt:Vj.background,editType:"plot"},bordercolor:{valType:"color",dflt:Vj.defaultLine,editType:"plot"},borderwidth:{valType:"integer",dflt:0,min:0,editType:"plot"},autorange:{valType:"boolean",dflt:!0,editType:"calc",impliedEdits:{"range[0]":void 0,"range[1]":void 0}},range:{valType:"info_array",items:[{valType:"any",editType:"calc",impliedEdits:{"^autorange":!1}},{valType:"any",editType:"calc",impliedEdits:{"^autorange":!1}}],editType:"calc",impliedEdits:{autorange:!1}},thickness:{valType:"number",dflt:.15,min:0,max:1,editType:"plot"},visible:{valType:"boolean",dflt:!0,editType:"calc"},editType:"calc"}});var H8=z((lKe,Wj)=>{"use strict";Wj.exports={_isSubplotObj:!0,rangemode:{valType:"enumerated",values:["auto","fixed","match"],dflt:"match",editType:"calc"},range:{valType:"info_array",items:[{valType:"any",editType:"plot"},{valType:"any",editType:"plot"}],editType:"plot"},editType:"calc"}});var zg={};qt(zg,{bgClassName:()=>BSe,containerClassName:()=>ISe,extraPad:()=>sqe,grabAreaCursor:()=>aqe,grabAreaFill:()=>tqe,grabAreaMaxClassName:()=>XSe,grabAreaMinClassName:()=>VSe,grabAreaWidth:()=>nqe,grabberMaxClassName:()=>WSe,grabberMinClassName:()=>YSe,handleMaxClassName:()=>ZSe,handleMinClassName:()=>jSe,handleRadius:()=>oqe,handleStrokeWidth:()=>lqe,handleWidth:()=>iqe,maskColor:()=>KSe,maskMaxClassName:()=>USe,maskMaxOppAxisClassName:()=>JSe,maskMinClassName:()=>HSe,maskMinOppAxisClassName:()=>$Se,maskOppAxisColor:()=>QSe,name:()=>NSe,rangePlotClassName:()=>OSe,slideBoxClassName:()=>GSe,slideBoxCursor:()=>rqe,slideBoxFill:()=>eqe});var NSe,ISe,BSe,OSe,HSe,USe,GSe,YSe,VSe,jSe,WSe,XSe,ZSe,$Se,JSe,KSe,QSe,eqe,rqe,tqe,aqe,nqe,iqe,oqe,lqe,sqe,Ng=St(()=>{"use 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n=r[a],i=t[a];if(!(n.rangeslider||t._requestRangeslider[i._id]))return;Og.isPlainObject(n.rangeslider)||(n.rangeslider={});var o=n.rangeslider,l=Jj.newContainer(i,"rangeslider");function s(_,k){return Og.coerce(o,l,vqe,_,k)}var u,f;function c(_,k){return Og.coerce(u,f,hqe,_,k)}var v=s("visible");if(v){s("bgcolor",t.plot_bgcolor),s("bordercolor"),s("borderwidth"),s("thickness"),s("autorange",!i.isValidRange(o.range)),s("range");var d=t._subplots;if(d)for(var p=d.cartesian.filter(function(_){return _.slice(0,Math.max(0,_.indexOf("y")))===Kj.name2id(a)}).map(function(_){return _.slice(_.indexOf("y"),_.length)}),y=Og.simpleMap(p,Kj.id2name),m=0;m{"use strict";var dqe=Aa().list,pqe=Bh().getAutoRange,mqe=(Ng(),ze(zg));rW.exports=function(r){for(var t=dqe(r,"x",!0),a=0;a{"use strict";var Hg=Pr(),yqe=Tr(),gqe=ma(),ua=ke(),Ug=ua.strTranslate,nW=Jr(),Qs=qr(),bqe=n0(),xqe=io(),U8=Aa(),_qe=Vi(),wqe=Os(),Wr=(Ng(),ze(zg));iW.exports=function(e){for(var r=e._fullLayout,t=r._rangeSliderData,a=0;a=G.max)U=P[Y+1];else if(O=G.pmax)U=P[Y+1];else if(O0?e.touches[0].clientX:0}function Aqe(e,r,t,a){if(r._context.staticPlot)return;var n=e.select("rect."+Wr.slideBoxClassName).node(),i=e.select("rect."+Wr.grabAreaMinClassName).node(),o=e.select("rect."+Wr.grabAreaMaxClassName).node();function l(){var s=Hg.event,u=s.target,f=aW(s),c=f-e.node().getBoundingClientRect().left,v=a.d2p(t._rl[0]),d=a.d2p(t._rl[1]),p=_qe.coverSlip();this.addEventListener("touchmove",y),this.addEventListener("touchend",m),p.addEventListener("mousemove",y),p.addEventListener("mouseup",m);function y(b){var A=aW(b),w=+A-f,x,_,k;switch(u){case n:if(k="ew-resize",v+w>t._length||d+w<0)return;x=v+w,_=d+w;break;case i:if(k="col-resize",v+w>t._length)return;x=v+w,_=d;break;case o:if(k="col-resize",d+w<0)return;x=v,_=d+w;break;default:k="ew-resize",x=c,_=c+w;break}if(_{"use strict";var 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i=0;inv*u?(b=u,m=b*nv):(m=s,b=m/nv),A=o*m/s,w=l*b/u,p=r.l+r.w*n-m/2,y=r.t+r.h*(1-i)-b/2,t.x0=p,t.y0=y,t.w=m,t.h=b,t.sum=f,t.xaxis={type:"linear",range:[c+2*d-f,f-c-2*v],domain:[n-A/2,n+A/2],_id:"x"},x2(t.xaxis,t.graphDiv._fullLayout),t.xaxis.setScale(),t.xaxis.isPtWithinRange=function(I){return I.a>=t.aaxis.range[0]&&I.a<=t.aaxis.range[1]&&I.b>=t.baxis.range[1]&&I.b<=t.baxis.range[0]&&I.c>=t.caxis.range[1]&&I.c<=t.caxis.range[0]},t.yaxis={type:"linear",range:[c,f-v-d],domain:[i-w/2,i+w/2],_id:"y"},x2(t.yaxis,t.graphDiv._fullLayout),t.yaxis.setScale(),t.yaxis.isPtWithinRange=function(){return!0};var x=t.yaxis.domain[0],_=t.aaxis=TA({},e.aaxis,{range:[c,f-v-d],side:"left",tickangle:(+e.aaxis.tickangle||0)-30,domain:[x,x+w*nv],anchor:"free",position:0,_id:"y",_length:m});x2(_,t.graphDiv._fullLayout),_.setScale();var k=t.baxis=TA({},e.baxis,{range:[f-c-d,v],side:"bottom",domain:t.xaxis.domain,anchor:"free",position:0,_id:"x",_length:m});x2(k,t.graphDiv._fullLayout),k.setScale();var T=t.caxis=TA({},e.caxis,{range:[f-c-v,d],side:"right",tickangle:(+e.caxis.tickangle||0)+30,domain:[x,x+w*nv],anchor:"free",position:0,_id:"y",_length:m});x2(T,t.graphDiv._fullLayout),T.setScale();var q="M"+p+","+(y+b)+"h"+m+"l-"+m/2+",-"+b+"Z";t.clipDef.select("path").attr("d",q),t.layers.plotbg.select("path").attr("d",q);var C="M0,"+b+"h"+m+"l-"+m/2+",-"+b+"Z";t.clipDefRelative.select("path").attr("d",C);var E=Sl(p,y);t.plotContainer.selectAll(".scatterlayer,.maplayer").attr("transform",E),t.clipDefRelative.select("path").attr("transform",null);var P=Sl(p-k._offset,y+b);t.layers.baxis.attr("transform",P),t.layers.bgrid.attr("transform",P);var R=Sl(p+m/2,y)+"rotate(30)"+Sl(0,-_._offset);t.layers.aaxis.attr("transform",R),t.layers.agrid.attr("transform",R);var N=Sl(p+m/2,y)+"rotate(-30)"+Sl(0,-T._offset);t.layers.caxis.attr("transform",N),t.layers.cgrid.attr("transform",N),t.drawAxes(!0),t.layers.aline.select("path").attr("d",_.showline?"M"+p+","+(y+b)+"l"+m/2+",-"+b:"M0,0").call(Bf.stroke,_.linecolor||"#000").style("stroke-width",(_.linewidth||0)+"px"),t.layers.bline.select("path").attr("d",k.showline?"M"+p+","+(y+b)+"h"+m:"M0,0").call(Bf.stroke,k.linecolor||"#000").style("stroke-width",(k.linewidth||0)+"px"),t.layers.cline.select("path").attr("d",T.showline?"M"+(p+m/2)+","+y+"l"+m/2+","+b:"M0,0").call(Bf.stroke,T.linecolor||"#000").style("stroke-width",(T.linewidth||0)+"px"),t.graphDiv._context.staticPlot||t.initInteractions(),N3.setClipUrl(t.layers.frontplot,t._hasClipOnAxisFalse?null:t.clipId,t.graphDiv)};ql.drawAxes=function(e){var r=this,t=r.graphDiv,a=r.id.slice(7)+"title",n=r.layers,i=r.aaxis,o=r.baxis,l=r.caxis;if(r.drawAx(i),r.drawAx(o),r.drawAx(l),e){var s=Math.max(i.showticklabels?i.tickfont.size/2:0,(l.showticklabels?l.tickfont.size*.75:0)+(l.ticks==="outside"?l.ticklen*.87:0)),u=(o.showticklabels?o.tickfont.size:0)+(o.ticks==="outside"?o.ticklen:0)+3;n["a-title"]=MA.draw(t,"a"+a,{propContainer:i,propName:r.id+".aaxis.title.text",placeholder:z3(t,"Click to enter Component A title"),attributes:{x:r.x0+r.w/2,y:r.y0-i.title.font.size/3-s,"text-anchor":"middle"}}),n["b-title"]=MA.draw(t,"b"+a,{propContainer:o,propName:r.id+".baxis.title.text",placeholder:z3(t,"Click to enter Component B title"),attributes:{x:r.x0-u,y:r.y0+r.h+o.title.font.size*.83+u,"text-anchor":"middle"}}),n["c-title"]=MA.draw(t,"c"+a,{propContainer:l,propName:r.id+".caxis.title.text",placeholder:z3(t,"Click to enter Component C title"),attributes:{x:r.x0+r.w+u,y:r.y0+r.h+l.title.font.size*.83+u,"text-anchor":"middle"}})}};ql.drawAx=function(e){var r=this,t=r.graphDiv,a=e._name,n=a.charAt(0),i=e._id,o=r.layers[a],l=30,s=n+"tickLayout",u=JRe(e);r[s]!==u&&(o.selectAll("."+i+"tick").remove(),r[s]=u),e.setScale();var f=iu.calcTicks(e),c=iu.clipEnds(e,f),v=iu.makeTransTickFn(e),d=iu.getTickSigns(e)[2],p=ls.deg2rad(l),y=d*(e.linewidth||1)/2,m=d*e.ticklen,b=r.w,A=r.h,w=n==="b"?"M0,"+y+"l"+Math.sin(p)*m+","+Math.cos(p)*m:"M"+y+",0l"+Math.cos(p)*m+","+-Math.sin(p)*m,x={a:"M0,0l"+A+",-"+b/2,b:"M0,0l-"+b/2+",-"+A,c:"M0,0l-"+A+","+b/2}[n];iu.drawTicks(t,e,{vals:e.ticks==="inside"?c:f,layer:o,path:w,transFn:v,crisp:!1}),iu.drawGrid(t,e,{vals:c,layer:r.layers[n+"grid"],path:x,transFn:v,crisp:!1}),iu.drawLabels(t,e,{vals:f,layer:o,transFn:v,labelFns:iu.makeLabelFns(e,0,l)})};function JRe(e){return e.ticks+String(e.ticklen)+String(e.showticklabels)}var Ya=oee.MINZOOM/2+.87,KRe="m-0.87,.5h"+Ya+"v3h-"+(Ya+5.2)+"l"+(Ya/2+2.6)+",-"+(Ya*.87+4.5)+"l2.6,1.5l-"+Ya/2+","+Ya*.87+"Z",QRe="m0.87,.5h-"+Ya+"v3h"+(Ya+5.2)+"l-"+(Ya/2+2.6)+",-"+(Ya*.87+4.5)+"l-2.6,1.5l"+Ya/2+","+Ya*.87+"Z",eFe="m0,1l"+Ya/2+","+Ya*.87+"l2.6,-1.5l-"+(Ya/2+2.6)+",-"+(Ya*.87+4.5)+"l-"+(Ya/2+2.6)+","+(Ya*.87+4.5)+"l2.6,1.5l"+Ya/2+",-"+Ya*.87+"Z",rFe="m0.5,0.5h5v-2h-5v-5h-2v5h-5v2h5v5h2Z",tee=!0;ql.clearOutline=function(){$Re(this.dragOptions),ZRe(this.dragOptions.gd)};ql.initInteractions=function(){var e=this,r=e.layers.plotbg.select("path").node(),t=e.graphDiv,a=t._fullLayout._zoomlayer,n,i;this.dragOptions={element:r,gd:t,plotinfo:{id:e.id,domain:t._fullLayout[e.id].domain,xaxis:e.xaxis,yaxis:e.yaxis},subplot:e.id,prepFn:function(P,R,N){e.dragOptions.xaxes=[e.xaxis],e.dragOptions.yaxes=[e.yaxis],n=t._fullLayout._invScaleX,i=t._fullLayout._invScaleY;var I=e.dragOptions.dragmode=t._fullLayout.dragmode;ree(I)?e.dragOptions.minDrag=1:e.dragOptions.minDrag=void 0,I==="zoom"?(e.dragOptions.moveFn=k,e.dragOptions.clickFn=b,e.dragOptions.doneFn=T,A(P,R,N)):I==="pan"?(e.dragOptions.moveFn=C,e.dragOptions.clickFn=b,e.dragOptions.doneFn=E,q(),e.clearOutline(t)):(jRe(I)||ree(I))&&WRe(P,R,N,e.dragOptions,I)}};var o,l,s,u,f,c,v,d,p,y;function m(P){var R={};return R[e.id+".aaxis.min"]=P.a,R[e.id+".baxis.min"]=P.b,R[e.id+".caxis.min"]=P.c,R}function b(P,R){var N=t._fullLayout.clickmode;aee(t),P===2&&(t.emit("plotly_doubleclick",null),AA.call("_guiRelayout",t,m({a:0,b:0,c:0}))),N.indexOf("select")>-1&&P===1&&XRe(R,t,[e.xaxis],[e.yaxis],e.id,e.dragOptions),N.indexOf("event")>-1&&eee.click(t,R,e.id)}function A(P,R,N){var I=r.getBoundingClientRect();o=R-I.left,l=N-I.top,t._fullLayout._calcInverseTransform(t);var O=t._fullLayout._invTransform,U=ls.apply3DTransform(O)(o,l);o=U[0],l=U[1],s={a:e.aaxis.range[0],b:e.baxis.range[1],c:e.caxis.range[1]},f=s,u=e.aaxis.range[1]-s.a,c=Bf.luminosity(e.graphDiv._fullLayout[e.id].bgcolor),v="M0,"+e.h+"L"+e.w/2+", 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xx=On(),YYe=H0().attributes,VYe=Ca(),jYe=Ii(),{hovertemplateAttrs:WYe,texttemplateAttrs:XYe,templatefallbackAttrs:Ase}=di(),bu=Mt().extendFlat,ZYe=Bi().pattern,_x=VYe({editType:"plot",arrayOk:!0,colorEditType:"plot"});Tse.exports={labels:{valType:"data_array",editType:"calc"},label0:{valType:"number",dflt:0,editType:"calc"},dlabel:{valType:"number",dflt:1,editType:"calc"},values:{valType:"data_array",editType:"calc"},marker:{colors:{valType:"data_array",editType:"calc"},line:{color:{valType:"color",dflt:jYe.defaultLine,arrayOk:!0,editType:"style"},width:{valType:"number",min:0,dflt:0,arrayOk:!0,editType:"style"},editType:"calc"},pattern:ZYe,editType:"calc"},text:{valType:"data_array",editType:"plot"},hovertext:{valType:"string",dflt:"",arrayOk:!0,editType:"style"},scalegroup:{valType:"string",dflt:"",editType:"calc"},textinfo:{valType:"flaglist",flags:["label","text","value","percent"],extras:["none"],editType:"calc"},hoverinfo:bu({},xx.hoverinfo,{flags:["label","text","value","percent","name"]}),hovertemplate:WYe({},{keys:["label","color","value","percent","text"]}),hovertemplatefallback:Ase(),texttemplate:XYe({editType:"plot"},{keys:["label","color","value","percent","text"]}),texttemplatefallback:Ase({editType:"plot"}),textposition:{valType:"enumerated",values:["inside","outside","auto","none"],dflt:"auto",arrayOk:!0,editType:"plot"},textfont:bu({},_x,{}),insidetextorientation:{valType:"enumerated",values:["horizontal","radial","tangential","auto"],dflt:"auto",editType:"plot"},insidetextfont:bu({},_x,{}),outsidetextfont:bu({},_x,{}),automargin:{valType:"boolean",dflt:!1,editType:"plot"},showlegend:bu({},xx.showlegend,{arrayOk:!0}),legend:bu({},xx.legend,{arrayOk:!0}),legendrank:bu({},xx.legendrank,{arrayOk:!0}),title:{text:{valType:"string",dflt:"",editType:"plot"},font:bu({},_x,{}),position:{valType:"enumerated",values:["top left","top center","top right","middle center","bottom left","bottom center","bottom right"],editType:"plot"},editType:"plot"},domain:YYe({name:"pie",trace:!0,editType:"calc"}),hole:{valType:"number",min:0,max:1,dflt:0,editType:"calc"},sort:{valType:"boolean",dflt:!0,editType:"calc"},direction:{valType:"enumerated",values:["clockwise","counterclockwise"],dflt:"counterclockwise",editType:"calc"},rotation:{valType:"angle",dflt:0,editType:"calc"},pull:{valType:"number",min:0,max:1,dflt:0,arrayOk:!0,editType:"calc"}}});var qse=z((par,Sse)=>{"use strict";var $Ye=Br(),s1=ke(),JYe=WM(),KYe=H0().defaults,QYe=Rf().handleText,eVe=ke().coercePattern;function Mse(e,r){var t=s1.isArrayOrTypedArray(e),a=s1.isArrayOrTypedArray(r),n=Math.min(t?e.length:1/0,a?r.length:1/0);if(isFinite(n)||(n=0),n&&a){for(var i,o=0;o0){i=!0;break}}i||(n=0)}return{hasLabels:t,hasValues:a,len:n}}function kse(e,r,t,a,n){var i=a("marker.line.width");i&&a("marker.line.color",n?void 0:t.paper_bgcolor);var o=a("marker.colors");eVe(a,"marker.pattern",o),e.marker&&!r.marker.pattern.fgcolor&&(r.marker.pattern.fgcolor=e.marker.colors),r.marker.pattern.bgcolor||(r.marker.pattern.bgcolor=t.paper_bgcolor)}function rVe(e,r,t,a){function n(A,w){return s1.coerce(e,r,JYe,A,w)}var i=n("labels"),o=n("values"),l=Mse(i,o),s=l.len;if(r._hasLabels=l.hasLabels,r._hasValues=l.hasValues,!r._hasLabels&&r._hasValues&&(n("label0"),n("dlabel")),!s){r.visible=!1;return}r._length=s,kse(e,r,a,n,!0),n("scalegroup");var u=n("text"),f=n("texttemplate");n("texttemplatefallback");var c;if(f||(c=n("textinfo",s1.isArrayOrTypedArray(u)?"text+percent":"percent")),n("hovertext"),n("hovertemplate"),n("hovertemplatefallback"),f||c&&c!=="none"){var v=n("textposition");QYe(e,r,a,n,v,{moduleHasSelected:!1,moduleHasUnselected:!1,moduleHasConstrain:!1,moduleHasCliponaxis:!1,moduleHasTextangle:!1,moduleHasInsideanchor:!1});var d=Array.isArray(v)||v==="auto",p=d||v==="outside";p&&n("automargin"),(v==="inside"||v==="auto"||Array.isArray(v))&&n("insidetextorientation")}else c==="none"&&n("textposition","none");KYe(r,a,n);var y=n("hole"),m=n("title.text");if(m){var b=n("title.position",y?"middle center":"top center");!y&&b==="middle center"&&(r.title.position="top center"),s1.coerceFont(n,"title.font",a.font)}n("sort"),n("direction"),n("rotation"),n("pull")}Sse.exports={handleLabelsAndValues:Mse,handleMarkerDefaults:kse,supplyDefaults:rVe}});var XM=z((mar,Lse)=>{"use strict";Lse.exports={hiddenlabels:{valType:"data_array",editType:"calc"},piecolorway:{valType:"colorlist",editType:"calc"},extendpiecolors:{valType:"boolean",dflt:!0,editType:"calc"}}});var Dse=z((yar,Cse)=>{"use strict";var tVe=ke(),aVe=XM();Cse.exports=function(r,t){function a(n,i){return tVe.coerce(r,t,aVe,n,i)}a("hiddenlabels"),a("piecolorway",t.colorway),a("extendpiecolors")}});var ZM=z((gar,Rse)=>{"use strict";var nVe=Br(),Fv=qr(),iVe={};function oVe(e,r){var t=[],a=e._fullLayout,n=a.hiddenlabels||[],i=r.labels,o=r.marker.colors||[],l=r.values,s=r._length,u=r._hasValues&&s,f,c;if(r.dlabel)for(i=new Array(s),f=0;f=0});var x=r.type==="funnelarea"?y:r.sort;return x&&t.sort(function(_,k){return k.v-_.v}),t[0]&&(t[0].vTotal=p),t}function Ese(e){return function(t,a){if(!t||!Fv.isValid(t))return!1;let n=Fv.rgbaString(t);return e[a]||(e[a]=n),n}}function lVe(e,r){var t=(r||{}).type;t||(t="pie");var a=e._fullLayout,n=e.calcdata,i=a[t+"colorway"],o=a["_"+t+"colormap"];a["extend"+t+"colors"]&&(i=Pse(i,iVe));for(var l=0,s=0;s{"use strict";var sVe=Ro().appendArrayMultiPointValues;Fse.exports=function(r,t){var a={curveNumber:t.index,pointNumbers:r.pts,data:t._input,fullData:t,label:r.label,color:r.color,value:r.v,percent:r.percent,text:r.text,bbox:r.bbox,v:r.v};return r.pts.length===1&&(a.pointNumber=a.i=r.pts[0]),sVe(a,t,r.pts),t.type==="funnelarea"&&(delete a.v,delete a.i),a}});var nue=z((xar,aue)=>{"use strict";var fi=Pr(),uVe=ma(),wx=Un(),Use=qr(),vs=Jr(),vn=ke(),fVe=vn.strScale,Nse=vn.strTranslate,$M=Fa(),Gse=a2(),cVe=Gse.recordMinTextSize,vVe=Gse.clearMinTextSize,Yse=(Id(),ze(Nd)).TEXTPAD,Dr=Om(),Ax=zse(),Ise=ke().isValidTextValue;function hVe(e,r){var t=e._context.staticPlot,a=e._fullLayout,n=a._size;vVe("pie",a),Wse(r,e),eue(r,n);var i=vn.makeTraceGroups(a._pielayer,r,"trace").each(function(o){var l=fi.select(this),s=o[0],u=s.trace;wVe(o),l.attr("stroke-linejoin","round"),l.each(function(){var f=fi.select(this).selectAll("g.slice").data(o);f.enter().append("g").classed("slice",!0),f.exit().remove();var c=[[[],[]],[[],[]]],v=!1;f.each(function(x,_){if(x.hidden){fi.select(this).selectAll("path,g").remove();return}x.pointNumber=x.i,x.curveNumber=u.index,c[x.pxmid[1]<0?0:1][x.pxmid[0]<0?0:1].push(x);var k=s.cx,T=s.cy,q=fi.select(this),C=q.selectAll("path.surface").data([x]);if(C.enter().append("path").classed("surface",!0).style({"pointer-events":t?"none":"all"}),q.call(Vse,e,o),u.pull){var E=+Dr.castOption(u.pull,x.pts)||0;E>0&&(k+=E*x.pxmid[0],T+=E*x.pxmid[1])}x.cxFinal=k,x.cyFinal=T;function P(G,V,W,j){var J=j*(V[0]-G[0]),te=j*(V[1]-G[1]);return"a"+j*s.r+","+j*s.r+" 0 "+x.largeArc+(W?" 1 ":" 0 ")+J+","+te}var R=u.hole;if(x.v===s.vTotal){var N="M"+(k+x.px0[0])+","+(T+x.px0[1])+P(x.px0,x.pxmid,!0,1)+P(x.pxmid,x.px0,!0,1)+"Z";R?C.attr("d","M"+(k+R*x.px0[0])+","+(T+R*x.px0[1])+P(x.px0,x.pxmid,!1,R)+P(x.pxmid,x.px0,!1,R)+"Z"+N):C.attr("d",N)}else{var I=P(x.px0,x.px1,!0,1);if(R){var O=1-R;C.attr("d","M"+(k+R*x.px1[0])+","+(T+R*x.px1[1])+P(x.px1,x.px0,!1,R)+"l"+O*x.px0[0]+","+O*x.px0[1]+I+"Z")}else C.attr("d","M"+k+","+T+"l"+x.px0[0]+","+x.px0[1]+I+"Z")}rue(e,x,s);var U=Dr.castOption(u.textposition,x.pts),Y=q.selectAll("g.slicetext").data(x.text&&U!=="none"?[0]:[]);Y.enter().append("g").classed("slicetext",!0),Y.exit().remove(),Y.each(function(){var G=vn.ensureSingle(fi.select(this),"text","",function($){$.attr("data-notex",1)}),V=vn.ensureUniformFontSize(e,U==="outside"?pVe(u,x,a.font):jse(u,x,a.font));G.text(x.text).attr({class:"slicetext",transform:"","text-anchor":"middle"}).call(vs.font,V).call($M.convertToTspans,e);var W=vs.bBox(G.node()),j;if(U==="outside")j=Hse(W,x);else if(j=Xse(W,x,s),U==="auto"&&j.scale<1){var J=vn.ensureUniformFontSize(e,u.outsidetextfont);G.call(vs.font,J),W=vs.bBox(G.node()),j=Hse(W,x)}var te=j.textPosAngle,ae=te===void 0?x.pxmid:Tx(s.r,te);if(j.targetX=k+ae[0]*j.rCenter+(j.x||0),j.targetY=T+ae[1]*j.rCenter+(j.y||0),tue(j,W),j.outside){var se=j.targetY;x.yLabelMin=se-W.height/2,x.yLabelMid=se,x.yLabelMax=se+W.height/2,x.labelExtraX=0,x.labelExtraY=0,v=!0}j.fontSize=V.size,cVe(u.type,j,a),o[_].transform=j,vn.setTransormAndDisplay(G,j)})});var d=fi.select(this).selectAll("g.titletext").data(u.title.text?[0]:[]);if(d.enter().append("g").classed("titletext",!0),d.exit().remove(),d.each(function(){var x=vn.ensureSingle(fi.select(this),"text","",function(T){T.attr("data-notex",1)}),_=u.title.text;u._meta&&(_=vn.templateString(_,u._meta)),x.text(_).attr({class:"titletext",transform:"","text-anchor":"middle"}).call(vs.font,u.title.font).call($M.convertToTspans,e);var k;u.title.position==="middle center"?k=gVe(s):k=Kse(s,n),x.attr("transform",Nse(k.x,k.y)+fVe(Math.min(1,k.scale))+Nse(k.tx,k.ty))}),v&&xVe(c,u),dVe(f,u),v&&u.automargin){var p=vs.bBox(l.node()),y=u.domain,m=n.w*(y.x[1]-y.x[0]),b=n.h*(y.y[1]-y.y[0]),A=(.5*m-s.r)/n.w,w=(.5*b-s.r)/n.h;uVe.autoMargin(e,"pie."+u.uid+".automargin",{xl:y.x[0]-A,xr:y.x[1]+A,yb:y.y[0]-w,yt:y.y[1]+w,l:Math.max(s.cx-s.r-p.left,0),r:Math.max(p.right-(s.cx+s.r),0),b:Math.max(p.bottom-(s.cy+s.r),0),t:Math.max(s.cy-s.r-p.top,0),pad:5})}})});setTimeout(function(){i.selectAll("tspan").each(function(){var o=fi.select(this);o.attr("dy")&&o.attr("dy",o.attr("dy"))})},0)}function dVe(e,r){e.each(function(t){var a=fi.select(this);if(!t.labelExtraX&&!t.labelExtraY){a.select("path.textline").remove();return}var n=a.select("g.slicetext text");t.transform.targetX+=t.labelExtraX,t.transform.targetY+=t.labelExtraY,vn.setTransormAndDisplay(n,t.transform);var i=t.cxFinal+t.pxmid[0],o=t.cyFinal+t.pxmid[1],l="M"+i+","+o,s=(t.yLabelMax-t.yLabelMin)*(t.pxmid[0]<0?-1:1)/4;if(t.labelExtraX){var u=t.labelExtraX*t.pxmid[1]/t.pxmid[0],f=t.yLabelMid+t.labelExtraY-(t.cyFinal+t.pxmid[1]);Math.abs(u)>Math.abs(f)?l+="l"+f*t.pxmid[0]/t.pxmid[1]+","+f+"H"+(i+t.labelExtraX+s):l+="l"+t.labelExtraX+","+u+"v"+(f-u)+"h"+s}else l+="V"+(t.yLabelMid+t.labelExtraY)+"h"+s;vn.ensureSingle(a,"path","textline").call(Use.stroke,r.outsidetextfont.color).attr({"stroke-width":Math.min(2,r.outsidetextfont.size/8),d:l,fill:"none"})})}function Vse(e,r,t){var a=t[0],n=a.cx,i=a.cy,o=a.trace,l=o.type==="funnelarea";"_hasHoverLabel"in o||(o._hasHoverLabel=!1),"_hasHoverEvent"in o||(o._hasHoverEvent=!1),e.on("mouseover",function(s){var u=r._fullLayout,f=r._fullData[o.index];if(!(r._dragging||u.hovermode===!1)){var c=f.hoverinfo;if(Array.isArray(c)&&(c=wx.castHoverinfo({hoverinfo:[Dr.castOption(c,s.pts)],_module:o._module},u,0)),c==="all"&&(c="label+text+value+percent+name"),f.hovertemplate||c!=="none"&&c!=="skip"&&c){var v=s.rInscribed||0,d=n+s.pxmid[0]*(1-v),p=i+s.pxmid[1]*(1-v),y=u.separators,m=[];if(c&&c.indexOf("label")!==-1&&m.push(s.label),s.text=Dr.castOption(f.hovertext||f.text,s.pts),c&&c.indexOf("text")!==-1){var b=s.text;vn.isValidTextValue(b)&&m.push(b)}s.value=s.v,s.valueLabel=Dr.formatPieValue(s.v,y),c&&c.indexOf("value")!==-1&&m.push(s.valueLabel),s.percent=s.v/a.vTotal,s.percentLabel=Dr.formatPiePercent(s.percent,y),c&&c.indexOf("percent")!==-1&&m.push(s.percentLabel);var A=f.hoverlabel,w=A.font,x=[];wx.loneHover({trace:o,x0:d-v*a.r,x1:d+v*a.r,y:p,_x0:l?n+s.TL[0]:d-v*a.r,_x1:l?n+s.TR[0]:d+v*a.r,_y0:l?i+s.TL[1]:p-v*a.r,_y1:l?i+s.BL[1]:p+v*a.r,text:m.join("
"),name:f.hovertemplate||c.indexOf("name")!==-1?f.name:void 0,idealAlign:s.pxmid[0]<0?"left":"right",color:Dr.castOption(A.bgcolor,s.pts)||s.color,borderColor:Dr.castOption(A.bordercolor,s.pts),fontFamily:Dr.castOption(w.family,s.pts),fontSize:Dr.castOption(w.size,s.pts),fontColor:Dr.castOption(w.color,s.pts),nameLength:Dr.castOption(A.namelength,s.pts),textAlign:Dr.castOption(A.align,s.pts),hovertemplate:Dr.castOption(f.hovertemplate,s.pts),hovertemplateLabels:s,eventData:[Ax(s,f)]},{container:u._hoverlayer.node(),outerContainer:u._paper.node(),gd:r,inOut_bbox:x}),s.bbox=x[0],o._hasHoverLabel=!0}o._hasHoverEvent=!0,r.emit("plotly_hover",{points:[Ax(s,f)],event:fi.event})}}),e.on("mouseout",function(s){var u=r._fullLayout,f=r._fullData[o.index],c=fi.select(this).datum();o._hasHoverEvent&&(s.originalEvent=fi.event,r.emit("plotly_unhover",{points:[Ax(c,f)],event:fi.event}),o._hasHoverEvent=!1),o._hasHoverLabel&&(wx.loneUnhover(u._hoverlayer.node()),o._hasHoverLabel=!1)}),e.on("click",function(s){var u=r._fullLayout,f=r._fullData[o.index];r._dragging||u.hovermode===!1||(r._hoverdata=[Ax(s,f)],wx.click(r,fi.event))})}function pVe(e,r,t){var a=Dr.castOption(e.outsidetextfont.color,r.pts)||Dr.castOption(e.textfont.color,r.pts)||t.color,n=Dr.castOption(e.outsidetextfont.family,r.pts)||Dr.castOption(e.textfont.family,r.pts)||t.family,i=Dr.castOption(e.outsidetextfont.size,r.pts)||Dr.castOption(e.textfont.size,r.pts)||t.size,o=Dr.castOption(e.outsidetextfont.weight,r.pts)||Dr.castOption(e.textfont.weight,r.pts)||t.weight,l=Dr.castOption(e.outsidetextfont.style,r.pts)||Dr.castOption(e.textfont.style,r.pts)||t.style,s=Dr.castOption(e.outsidetextfont.variant,r.pts)||Dr.castOption(e.textfont.variant,r.pts)||t.variant,u=Dr.castOption(e.outsidetextfont.textcase,r.pts)||Dr.castOption(e.textfont.textcase,r.pts)||t.textcase,f=Dr.castOption(e.outsidetextfont.lineposition,r.pts)||Dr.castOption(e.textfont.lineposition,r.pts)||t.lineposition,c=Dr.castOption(e.outsidetextfont.shadow,r.pts)||Dr.castOption(e.textfont.shadow,r.pts)||t.shadow;return{color:a,family:n,size:i,weight:o,style:l,variant:s,textcase:u,lineposition:f,shadow:c}}function jse(e,r,t){var a=Dr.castOption(e.insidetextfont.color,r.pts);!a&&e._input.textfont&&(a=Dr.castOption(e._input.textfont.color,r.pts));var n=Dr.castOption(e.insidetextfont.family,r.pts)||Dr.castOption(e.textfont.family,r.pts)||t.family,i=Dr.castOption(e.insidetextfont.size,r.pts)||Dr.castOption(e.textfont.size,r.pts)||t.size,o=Dr.castOption(e.insidetextfont.weight,r.pts)||Dr.castOption(e.textfont.weight,r.pts)||t.weight,l=Dr.castOption(e.insidetextfont.style,r.pts)||Dr.castOption(e.textfont.style,r.pts)||t.style,s=Dr.castOption(e.insidetextfont.variant,r.pts)||Dr.castOption(e.textfont.variant,r.pts)||t.variant,u=Dr.castOption(e.insidetextfont.textcase,r.pts)||Dr.castOption(e.textfont.textcase,r.pts)||t.textcase,f=Dr.castOption(e.insidetextfont.lineposition,r.pts)||Dr.castOption(e.textfont.lineposition,r.pts)||t.lineposition,c=Dr.castOption(e.insidetextfont.shadow,r.pts)||Dr.castOption(e.textfont.shadow,r.pts)||t.shadow;return{color:a||Use.contrast(r.color),family:n,size:i,weight:o,style:l,variant:s,textcase:u,lineposition:f,shadow:c}}function Wse(e,r){for(var t,a,n=0;n=-4;A-=2)b(Math.PI*A,"tan");for(A=4;A>=-4;A-=2)b(Math.PI*(A+1),"tan")}if(c||d){for(A=4;A>=-4;A-=2)b(Math.PI*(A+1.5),"rad");for(A=4;A>=-4;A-=2)b(Math.PI*(A+.5),"rad")}}if(l||p||c){var w=Math.sqrt(e.width*e.width+e.height*e.height);if(m={scale:n*a*2/w,rCenter:1-n,rotate:0},m.textPosAngle=(r.startangle+r.stopangle)/2,m.scale>=1)return m;y.push(m)}(p||d)&&(m=Bse(e,a,o,s,u),m.textPosAngle=(r.startangle+r.stopangle)/2,y.push(m)),(p||v)&&(m=Ose(e,a,o,s,u),m.textPosAngle=(r.startangle+r.stopangle)/2,y.push(m));for(var x=0,_=0,k=0;k=1)break}return y[x]}function mVe(e,r){var t=e.startangle,a=e.stopangle;return t>r&&r>a||t0?1:-1)/2,y:i/(1+t*t/(a*a)),outside:!0}}function gVe(e){var r=Math.sqrt(e.titleBox.width*e.titleBox.width+e.titleBox.height*e.titleBox.height);return{x:e.cx,y:e.cy,scale:e.trace.hole*e.r*2/r,tx:0,ty:-e.titleBox.height/2+e.trace.title.font.size}}function Kse(e,r){var t=1,a=1,n,i=e.trace,o={x:e.cx,y:e.cy},l={tx:0,ty:0};l.ty+=i.title.font.size,n=Qse(i),i.title.position.indexOf("top")!==-1?(o.y-=(1+n)*e.r,l.ty-=e.titleBox.height):i.title.position.indexOf("bottom")!==-1&&(o.y+=(1+n)*e.r);var s=bVe(e.r,e.trace.aspectratio),u=r.w*(i.domain.x[1]-i.domain.x[0])/2;return i.title.position.indexOf("left")!==-1?(u=u+s,o.x-=(1+n)*s,l.tx+=e.titleBox.width/2):i.title.position.indexOf("center")!==-1?u*=2:i.title.position.indexOf("right")!==-1&&(u=u+s,o.x+=(1+n)*s,l.tx-=e.titleBox.width/2),t=u/e.titleBox.width,a=JM(e,r)/e.titleBox.height,{x:o.x,y:o.y,scale:Math.min(t,a),tx:l.tx,ty:l.ty}}function bVe(e,r){return e/(r===void 0?1:r)}function JM(e,r){var t=e.trace,a=r.h*(t.domain.y[1]-t.domain.y[0]);return Math.min(e.titleBox.height,a/2)}function Qse(e){var r=e.pull;if(!r)return 0;var t;if(vn.isArrayOrTypedArray(r))for(r=0,t=0;tr&&(r=e.pull[t]);return r}function xVe(e,r){var t,a,n,i,o,l,s,u,f,c,v,d,p;function y(w,x){return w.pxmid[1]-x.pxmid[1]}function m(w,x){return 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t=r._fullLayout._pielayer.selectAll(".trace");TVe(r,t,"pie"),t.each(function(a){var n=a[0],i=n.trace,o=iue.select(this);o.style({opacity:i.opacity}),o.selectAll("path.surface").each(function(l){iue.select(this).call(AVe,l,i,r)})})}});var uue=z(zv=>{"use strict";var sue=ma();zv.name="pie";zv.plot=function(e,r,t,a){sue.plotBasePlot(zv.name,e,r,t,a)};zv.clean=function(e,r,t,a){sue.cleanBasePlot(zv.name,e,r,t,a)}});var cue=z((Aar,fue)=>{"use strict";fue.exports={attributes:WM(),supplyDefaults:qse().supplyDefaults,supplyLayoutDefaults:Dse(),layoutAttributes:XM(),calc:ZM().calc,crossTraceCalc:ZM().crossTraceCalc,plot:nue().plot,style:lue(),styleOne:Hm(),moduleType:"trace",name:"pie",basePlotModule:uue(),categories:["pie-like","pie","showLegend"],meta:{}}});var hue=z((Tar,vue)=>{"use strict";vue.exports=cue()});var xn=z((Mar,pue)=>{"use strict";var due=Object.getOwnPropertySymbols,MVe=Object.prototype.hasOwnProperty,kVe=Object.prototype.propertyIsEnumerable;function SVe(e){if(e==null)throw 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KM(e,r,t,a){if(this._calendar=e,this._year=r,this._month=t,this._day=a,this._calendar._validateLevel===0&&!this._calendar.isValid(this._year,this._month,this._day))throw(Gr.local.invalidDate||Gr.regionalOptions[""].invalidDate).replace(/\{0\}/,this._calendar.local.name)}function Mx(e,r){return e=""+e,"000000".substring(0,r-e.length)+e}kx(KM.prototype,{newDate:function(e,r,t){return this._calendar.newDate(e==null?this:e,r,t)},year:function(e){return arguments.length===0?this._year:this.set(e,"y")},month:function(e){return arguments.length===0?this._month:this.set(e,"m")},day:function(e){return arguments.length===0?this._day:this.set(e,"d")},date:function(e,r,t){if(!this._calendar.isValid(e,r,t))throw(Gr.local.invalidDate||Gr.regionalOptions[""].invalidDate).replace(/\{0\}/,this._calendar.local.name);return this._year=e,this._month=r,this._day=t,this},leapYear:function(){return this._calendar.leapYear(this)},epoch:function(){return this._calendar.epoch(this)},formatYear:function(){return this._calendar.formatYear(this)},monthOfYear:function(){return this._calendar.monthOfYear(this)},weekOfYear:function(){return this._calendar.weekOfYear(this)},daysInYear:function(){return this._calendar.daysInYear(this)},dayOfYear:function(){return this._calendar.dayOfYear(this)},daysInMonth:function(){return this._calendar.daysInMonth(this)},dayOfWeek:function(){return this._calendar.dayOfWeek(this)},weekDay:function(){return this._calendar.weekDay(this)},extraInfo:function(){return this._calendar.extraInfo(this)},add:function(e,r){return this._calendar.add(this,e,r)},set:function(e,r){return this._calendar.set(this,e,r)},compareTo:function(e){if(this._calendar.name!==e._calendar.name)throw(Gr.local.differentCalendars||Gr.regionalOptions[""].differentCalendars).replace(/\{0\}/,this._calendar.local.name).replace(/\{1\}/,e._calendar.local.name);var r=this._year!==e._year?this._year-e._year:this._month!==e._month?this.monthOfYear()-e.monthOfYear():this._day-e._day;return r===0?0:r<0?-1:1},calendar:function(){return this._calendar},toJD:function(){return this._calendar.toJD(this)},fromJD:function(e){return this._calendar.fromJD(e)},toJSDate:function(){return this._calendar.toJSDate(this)},fromJSDate:function(e){return this._calendar.fromJSDate(e)},toString:function(){return(this.year()<0?"-":"")+Mx(Math.abs(this.year()),4)+"-"+Mx(this.month(),2)+"-"+Mx(this.day(),2)}});function QM(){this.shortYearCutoff="+10"}kx(QM.prototype,{_validateLevel:0,newDate:function(e,r,t){return e==null?this.today():(e.year&&(this._validate(e,r,t,Gr.local.invalidDate||Gr.regionalOptions[""].invalidDate),t=e.day(),r=e.month(),e=e.year()),new KM(this,e,r,t))},today:function(){return this.fromJSDate(new Date)},epoch:function(e){var r=this._validate(e,this.minMonth,this.minDay,Gr.local.invalidYear||Gr.regionalOptions[""].invalidYear);return r.year()<0?this.local.epochs[0]:this.local.epochs[1]},formatYear:function(e){var r=this._validate(e,this.minMonth,this.minDay,Gr.local.invalidYear||Gr.regionalOptions[""].invalidYear);return(r.year()<0?"-":"")+Mx(Math.abs(r.year()),4)},monthsInYear:function(e){return this._validate(e,this.minMonth,this.minDay,Gr.local.invalidYear||Gr.regionalOptions[""].invalidYear),12},monthOfYear:function(e,r){var t=this._validate(e,r,this.minDay,Gr.local.invalidMonth||Gr.regionalOptions[""].invalidMonth);return(t.month()+this.monthsInYear(t)-this.firstMonth)%this.monthsInYear(t)+this.minMonth},fromMonthOfYear:function(e,r){var t=(r+this.firstMonth-2*this.minMonth)%this.monthsInYear(e)+this.minMonth;return this._validate(e,t,this.minDay,Gr.local.invalidMonth||Gr.regionalOptions[""].invalidMonth),t},daysInYear:function(e){var r=this._validate(e,this.minMonth,this.minDay,Gr.local.invalidYear||Gr.regionalOptions[""].invalidYear);return this.leapYear(r)?366:365},dayOfYear:function(e,r,t){var a=this._validate(e,r,t,Gr.local.invalidDate||Gr.regionalOptions[""].invalidDate);return a.toJD()-this.newDate(a.year(),this.fromMonthOfYear(a.year(),this.minMonth),this.minDay).toJD()+1},daysInWeek:function(){return 7},dayOfWeek:function(e,r,t){var a=this._validate(e,r,t,Gr.local.invalidDate||Gr.regionalOptions[""].invalidDate);return(Math.floor(this.toJD(a))+2)%this.daysInWeek()},extraInfo:function(e,r,t){return this._validate(e,r,t,Gr.local.invalidDate||Gr.regionalOptions[""].invalidDate),{}},add:function(e,r,t){return this._validate(e,this.minMonth,this.minDay,Gr.local.invalidDate||Gr.regionalOptions[""].invalidDate),this._correctAdd(e,this._add(e,r,t),r,t)},_add:function(e,r,t){if(this._validateLevel++,t==="d"||t==="w"){var a=e.toJD()+r*(t==="w"?this.daysInWeek():1),n=e.calendar().fromJD(a);return this._validateLevel--,[n.year(),n.month(),n.day()]}try{var i=e.year()+(t==="y"?r:0),o=e.monthOfYear()+(t==="m"?r:0),n=e.day(),l=function(f){for(;oc-1+f.minMonth;)i++,o-=c,c=f.monthsInYear(i)};t==="y"?(e.month()!==this.fromMonthOfYear(i,o)&&(o=this.newDate(i,e.month(),this.minDay).monthOfYear()),o=Math.min(o,this.monthsInYear(i)),n=Math.min(n,this.daysInMonth(i,this.fromMonthOfYear(i,o)))):t==="m"&&(l(this),n=Math.min(n,this.daysInMonth(i,this.fromMonthOfYear(i,o))));var s=[i,this.fromMonthOfYear(i,o),n];return this._validateLevel--,s}catch(u){throw this._validateLevel--,u}},_correctAdd:function(e,r,t,a){if(!this.hasYearZero&&(a==="y"||a==="m")&&(r[0]===0||e.year()>0!=r[0]>0)){var n={y:[1,1,"y"],m:[1,this.monthsInYear(-1),"m"],w:[this.daysInWeek(),this.daysInYear(-1),"d"],d:[1,this.daysInYear(-1),"d"]}[a],i=t<0?-1:1;r=this._add(e,t*n[0]+i*n[1],n[2])}return e.date(r[0],r[1],r[2])},set:function(e,r,t){this._validate(e,this.minMonth,this.minDay,Gr.local.invalidDate||Gr.regionalOptions[""].invalidDate);var a=t==="y"?r:e.year(),n=t==="m"?r:e.month(),i=t==="d"?r:e.day();return(t==="y"||t==="m")&&(i=Math.min(i,this.daysInMonth(a,n))),e.date(a,n,i)},isValid:function(e,r,t){this._validateLevel++;var a=this.hasYearZero||e!==0;if(a){var n=this.newDate(e,r,this.minDay);a=r>=this.minMonth&&r-this.minMonth=this.minDay&&t-this.minDay13.5?13:1),u=n-(s>2.5?4716:4715);return u<=0&&u--,this.newDate(u,s,l)},toJSDate:function(e,r,t){var a=this._validate(e,r,t,Gr.local.invalidDate||Gr.regionalOptions[""].invalidDate),n=new Date(a.year(),a.month()-1,a.day());return n.setHours(0),n.setMinutes(0),n.setSeconds(0),n.setMilliseconds(0),n.setHours(n.getHours()>12?n.getHours()+2:0),n},fromJSDate:function(e){return this.newDate(e.getFullYear(),e.getMonth()+1,e.getDate())}});var Gr=yue.exports=new mue;Gr.cdate=KM;Gr.baseCalendar=QM;Gr.calendars.gregorian=ek});var gue=z(()=>{var rk=xn(),Za=_n();rk(Za.regionalOptions[""],{invalidArguments:"Invalid arguments",invalidFormat:"Cannot format a date from another calendar",missingNumberAt:"Missing number at position {0}",unknownNameAt:"Unknown name at position {0}",unexpectedLiteralAt:"Unexpected literal at position {0}",unexpectedText:"Additional text found at end"});Za.local=Za.regionalOptions[""];rk(Za.cdate.prototype,{formatDate:function(e,r){return typeof e!="string"&&(r=e,e=""),this._calendar.formatDate(e||"",this,r)}});rk(Za.baseCalendar.prototype,{UNIX_EPOCH:Za.instance().newDate(1970,1,1).toJD(),SECS_PER_DAY:1440*60,TICKS_EPOCH:Za.instance().jdEpoch,TICKS_PER_DAY:1440*60*1e7,ATOM:"yyyy-mm-dd",COOKIE:"D, dd M yyyy",FULL:"DD, MM d, yyyy",ISO_8601:"yyyy-mm-dd",JULIAN:"J",RFC_822:"D, d M yy",RFC_850:"DD, dd-M-yy",RFC_1036:"D, d M yy",RFC_1123:"D, d M yyyy",RFC_2822:"D, d M yyyy",RSS:"D, d M yy",TICKS:"!",TIMESTAMP:"@",W3C:"yyyy-mm-dd",formatDate:function(e,r,t){if(typeof e!="string"&&(t=r,r=e,e=""),!r)return"";if(r.calendar()!==this)throw Za.local.invalidFormat||Za.regionalOptions[""].invalidFormat;e=e||this.local.dateFormat,t=t||{};for(var a=t.dayNamesShort||this.local.dayNamesShort,n=t.dayNames||this.local.dayNames,i=t.monthNumbers||this.local.monthNumbers,o=t.monthNamesShort||this.local.monthNamesShort,l=t.monthNames||this.local.monthNames,s=t.calculateWeek||this.local.calculateWeek,u=function(x,_){for(var k=1;w+k1},f=function(x,_,k,T){var q=""+_;if(u(x,T))for(;q.length1},A=function(R,N){var I=b(R,N),O=[2,3,I?4:2,I?4:2,10,11,20]["oyYJ@!".indexOf(R)+1],U=new RegExp("^-?\\d{1,"+O+"}"),Y=r.substring(q).match(U);if(!Y)throw(Za.local.missingNumberAt||Za.regionalOptions[""].missingNumberAt).replace(/\{0\}/,q);return q+=Y[0].length,parseInt(Y[0],10)},w=this,x=function(){if(typeof l=="function"){b("m");var R=l.call(w,r.substring(q));return q+=R.length,R}return A("m")},_=function(R,N,I,O){for(var U=b(R,O)?I:N,Y=0;Y-1){v=1,d=p;for(var P=this.daysInMonth(c,v);d>P;P=this.daysInMonth(c,v))v++,d-=P}return f>-1?this.fromJD(f):this.newDate(c,v,d)},determineDate:function(e,r,t,a,n){t&&typeof t!="object"&&(n=a,a=t,t=null),typeof a!="string"&&(n=a,a="");var i=this,o=function(l){try{return i.parseDate(a,l,n)}catch(c){}l=l.toLowerCase();for(var s=(l.match(/^c/)&&t?t.newDate():null)||i.today(),u=/([+-]?[0-9]+)\s*(d|w|m|y)?/g,f=u.exec(l);f;)s.add(parseInt(f[1],10),f[2]||"d"),f=u.exec(l);return s};return r=r?r.newDate():null,e=e==null?r:typeof e=="string"?o(e):typeof e=="number"?isNaN(e)||e===1/0||e===-1/0?r:i.today().add(e,"d"):i.newDate(e),e}})});var bue=z(()=>{var xu=_n(),LVe=xn(),tk=xu.instance();function Sx(e){this.local=this.regionalOptions[e||""]||this.regionalOptions[""]}Sx.prototype=new xu.baseCalendar;LVe(Sx.prototype,{name:"Chinese",jdEpoch:17214255e-1,hasYearZero:!1,minMonth:0,firstMonth:0,minDay:1,regionalOptions:{"":{name:"Chinese",epochs:["BEC","EC"],monthNumbers:function(e,r){if(typeof e=="string"){var t=e.match(DVe);return t?t[0]:""}var a=this._validateYear(e),n=e.month(),i=""+this.toChineseMonth(a,n);return r&&i.length<2&&(i="0"+i),this.isIntercalaryMonth(a,n)&&(i+="i"),i},monthNames:function(e){if(typeof e=="string"){var r=e.match(EVe);return r?r[0]:""}var t=this._validateYear(e),a=e.month(),n=this.toChineseMonth(t,a),i=["\u4E00\u6708","\u4E8C\u6708","\u4E09\u6708","\u56DB\u6708","\u4E94\u6708","\u516D\u6708","\u4E03\u6708","\u516B\u6708","\u4E5D\u6708","\u5341\u6708","\u5341\u4E00\u6708","\u5341\u4E8C\u6708"][n-1];return this.isIntercalaryMonth(t,a)&&(i="\u95F0"+i),i},monthNamesShort:function(e){if(typeof e=="string"){var r=e.match(PVe);return r?r[0]:""}var t=this._validateYear(e),a=e.month(),n=this.toChineseMonth(t,a),i=["\u4E00","\u4E8C","\u4E09","\u56DB","\u4E94","\u516D","\u4E03","\u516B","\u4E5D","\u5341","\u5341\u4E00","\u5341\u4E8C"][n-1];return this.isIntercalaryMonth(t,a)&&(i="\u95F0"+i),i},parseMonth:function(e,r){e=this._validateYear(e);var t=parseInt(r),a;if(isNaN(t))r[0]==="\u95F0"&&(a=!0,r=r.substring(1)),r[r.length-1]==="\u6708"&&(r=r.substring(0,r.length-1)),t=1+["\u4E00","\u4E8C","\u4E09","\u56DB","\u4E94","\u516D","\u4E03","\u516B","\u4E5D","\u5341","\u5341\u4E00","\u5341\u4E8C"].indexOf(r);else{var n=r[r.length-1];a=n==="i"||n==="I"}var i=this.toMonthIndex(e,t,a);return i},dayNames:["Sunday","Monday","Tuesday","Wednesday","Thursday","Friday","Saturday"],dayNamesShort:["Sun","Mon","Tue","Wed","Thu","Fri","Sat"],dayNamesMin:["Su","Mo","Tu","We","Th","Fr","Sa"],digits:null,dateFormat:"yyyy/mm/dd",firstDay:1,isRTL:!1}},_validateYear:function(e,r){if(e.year&&(e=e.year()),typeof e!="number"||e<1888||e>2111)throw r.replace(/\{0\}/,this.local.name);return e},toMonthIndex:function(e,r,t){var a=this.intercalaryMonth(e),n=t&&r!==a;if(n||r<1||r>12)throw xu.local.invalidMonth.replace(/\{0\}/,this.local.name);var i;return a?!t&&r<=a?i=r-1:i=r:i=r-1,i},toChineseMonth:function(e,r){e.year&&(e=e.year(),r=e.month());var 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a=this._validate(e,i,t,xu.local.invalidDate);e=this._validateYear(a.year()),r=a.month(),t=a.day();var n=this.isIntercalaryMonth(e,r),i=this.toChineseMonth(e,r),o=FVe(e,i,t,n);return tk.toJD(o.year,o.month,o.day)},fromJD:function(e){var r=tk.fromJD(e),t=RVe(r.year(),r.month(),r.day()),a=this.toMonthIndex(t.year,t.month,t.isIntercalary);return this.newDate(t.year,a,t.day)},fromString:function(e){var r=e.match(CVe),t=this._validateYear(+r[1]),a=+r[2],n=!!r[3],i=this.toMonthIndex(t,a,n),o=+r[4];return this.newDate(t,i,o)},add:function(e,r,t){var a=e.year(),n=e.month(),i=this.isIntercalaryMonth(a,n),o=this.toChineseMonth(a,n),l=Object.getPrototypeOf(Sx.prototype).add.call(this,e,r,t);if(t==="y"){var s=l.year(),u=l.month(),f=this.isIntercalaryMonth(s,o),c=i&&f?this.toMonthIndex(s,o,!0):this.toMonthIndex(s,o,!1);c!==u&&l.month(c)}return l}});var 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r=this._validate(t,this.minMonth,this.minDay,ic.local.invalidYear),t=r.year()+(r.year()<0?1:0);return t%4===3||t%4===-1},monthsInYear:function(e){return this._validate(e,this.minMonth,this.minDay,ic.local.invalidYear||ic.regionalOptions[""].invalidYear),13},weekOfYear:function(e,r,t){var a=this.newDate(e,r,t);return a.add(-a.dayOfWeek(),"d"),Math.floor((a.dayOfYear()-1)/7)+1},daysInMonth:function(e,r){var t=this._validate(e,r,this.minDay,ic.local.invalidMonth);return this.daysPerMonth[t.month()-1]+(t.month()===13&&this.leapYear(t.year())?1:0)},weekDay:function(e,r,t){return(this.dayOfWeek(e,r,t)||7)<6},toJD:function(e,r,t){var a=this._validate(e,r,t,ic.local.invalidDate);return e=a.year(),e<0&&e++,a.day()+(a.month()-1)*30+(e-1)*365+Math.floor(e/4)+this.jdEpoch-1},fromJD:function(e){var r=Math.floor(e)+.5-this.jdEpoch,t=Math.floor((r-Math.floor((r+366)/1461))/365)+1;t<=0&&t--,r=Math.floor(e)+.5-this.newDate(t,1,1).toJD();var a=Math.floor(r/30)+1,n=r-(a-1)*30+1;return 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t=this._validate(e,r,this.minDay,f1.local.invalidMonth);return this.daysPerMonth[t.month()-1]+(t.month()===2&&this.leapYear(t.year())?1:0)},weekDay:function(e,r,t){return(this.dayOfWeek(e,r,t)||7)<6},toJD:function(e,r,t){var a=this._validate(e,r,t,f1.local.invalidDate);return e=a.year(),r=a.month(),t=a.day(),e<0&&e++,r<=2&&(e--,r+=12),Math.floor(365.25*(e+4716))+Math.floor(30.6001*(r+1))+t-1524.5},fromJD:function(e){var r=Math.floor(e+.5),t=r+1524,a=Math.floor((t-122.1)/365.25),n=Math.floor(365.25*a),i=Math.floor((t-n)/30.6001),o=i-Math.floor(i<14?1:13),l=a-Math.floor(o>2?4716:4715),s=t-n-Math.floor(30.6001*i);return l<=0&&l--,this.newDate(l,o,s)}});f1.calendars.julian=sk});var Sue=z(()=>{var _o=_n(),GVe=xn();function fk(e){this.local=this.regionalOptions[e||""]||this.regionalOptions[""]}fk.prototype=new 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this._validate(e,r,t,_o.local.invalidDate),!0},extraInfo:function(e,r,t){var a=this._validate(e,r,t,_o.local.invalidDate),n=a.toJD(),i=this._toHaab(n),o=this._toTzolkin(n);return{haabMonthName:this.local.haabMonths[i[0]-1],haabMonth:i[0],haabDay:i[1],tzolkinDayName:this.local.tzolkinMonths[o[0]-1],tzolkinDay:o[0],tzolkinTrecena:o[1]}},_toHaab:function(e){e-=this.jdEpoch;var r=uk(e+8+340,365);return[Math.floor(r/20)+1,uk(r,20)]},_toTzolkin:function(e){return e-=this.jdEpoch,[kue(e+20,20),kue(e+4,13)]},toJD:function(e,r,t){var a=this._validate(e,r,t,_o.local.invalidDate);return a.day()+a.month()*20+a.year()*360+this.jdEpoch},fromJD:function(e){e=Math.floor(e)+.5-this.jdEpoch;var r=Math.floor(e/360);e=e%360,e+=e<0?360:0;var t=Math.floor(e/20),a=e%20;return this.newDate(r,t,a)}});function uk(e,r){return e-r*Math.floor(e/r)}function kue(e,r){return uk(e-1,r)+1}_o.calendars.mayan=fk});var Lue=z(()=>{var oc=_n(),YVe=xn();function 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lc.baseCalendar;VVe(vk.prototype,{name:"Nepali",jdEpoch:17007095e-1,daysPerMonth:[31,31,32,32,31,30,30,29,30,29,30,30],hasYearZero:!1,minMonth:1,firstMonth:1,minDay:1,daysPerYear:365,regionalOptions:{"":{name:"Nepali",epochs:["BBS","ABS"],monthNames:["Baisakh","Jestha","Ashadh","Shrawan","Bhadra","Ashwin","Kartik","Mangsir","Paush","Mangh","Falgun","Chaitra"],monthNamesShort:["Bai","Je","As","Shra","Bha","Ash","Kar","Mang","Pau","Ma","Fal","Chai"],dayNames:["Aaitabaar","Sombaar","Manglbaar","Budhabaar","Bihibaar","Shukrabaar","Shanibaar"],dayNamesShort:["Aaita","Som","Mangl","Budha","Bihi","Shukra","Shani"],dayNamesMin:["Aai","So","Man","Bu","Bi","Shu","Sha"],digits:null,dateFormat:"dd/mm/yyyy",firstDay:1,isRTL:!1}},leapYear:function(e){return this.daysInYear(e)!==this.daysPerYear},weekOfYear:function(e,r,t){var a=this.newDate(e,r,t);return a.add(-a.dayOfWeek(),"d"),Math.floor((a.dayOfYear()-1)/7)+1},daysInYear:function(e){var r=this._validate(e,this.minMonth,this.minDay,lc.local.invalidYear);if(e=r.year(),typeof this.NEPALI_CALENDAR_DATA[e]=="undefined")return this.daysPerYear;for(var t=0,a=this.minMonth;a<=12;a++)t+=this.NEPALI_CALENDAR_DATA[e][a];return t},daysInMonth:function(e,r){return e.year&&(r=e.month(),e=e.year()),this._validate(e,r,this.minDay,lc.local.invalidMonth),typeof this.NEPALI_CALENDAR_DATA[e]=="undefined"?this.daysPerMonth[r-1]:this.NEPALI_CALENDAR_DATA[e][r]},weekDay:function(e,r,t){return this.dayOfWeek(e,r,t)!==6},toJD:function(e,r,t){var a=this._validate(e,r,t,lc.local.invalidDate);e=a.year(),r=a.month(),t=a.day();var n=lc.instance(),i=0,o=r,l=e;this._createMissingCalendarData(e);var s=e-(o>9||o===9&&t>=this.NEPALI_CALENDAR_DATA[l][0]?56:57);for(r!==9&&(i=t,o--);o!==9;)o<=0&&(o=12,l--),i+=this.NEPALI_CALENDAR_DATA[l][o],o--;return r===9?(i+=t-this.NEPALI_CALENDAR_DATA[l][0],i<0&&(i+=n.daysInYear(s))):i+=this.NEPALI_CALENDAR_DATA[l][9]-this.NEPALI_CALENDAR_DATA[l][0],n.newDate(s,1,1).add(i,"d").toJD()},fromJD:function(e){var r=lc.instance(),t=r.fromJD(e),a=t.year(),n=t.dayOfYear(),i=a+56;this._createMissingCalendarData(i);for(var o=9,l=this.NEPALI_CALENDAR_DATA[i][0],s=this.NEPALI_CALENDAR_DATA[i][o]-l+1;n>s;)o++,o>12&&(o=1,i++),s+=this.NEPALI_CALENDAR_DATA[i][o];var u=this.NEPALI_CALENDAR_DATA[i][o]-(s-n);return this.newDate(i,o,u)},_createMissingCalendarData:function(e){var r=this.daysPerMonth.slice(0);r.unshift(17);for(var t=e-1;t{var Nv=_n(),jVe=xn();function Cx(e){this.local=this.regionalOptions[e||""]||this.regionalOptions[""]}function Lx(e){var r=e-475;e<0&&r++;var t=.242197,a=t*r,n=t*(r+1),i=a-Math.floor(a),o=n-Math.floor(n);return i>o}Cx.prototype=new 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t=this._validate(e,r,this.minDay,Nv.local.invalidMonth);return this.daysPerMonth[t.month()-1]+(t.month()===12&&this.leapYear(t.year())?1:0)},weekDay:function(e,r,t){return this.dayOfWeek(e,r,t)!==5},toJD:function(e,r,t){var a=this._validate(e,r,t,Nv.local.invalidDate);e=a.year(),r=a.month(),t=a.day();var n=0;if(e>0)for(var i=1;i0?e-1:e)*365+n+this.jdEpoch-1},fromJD:function(e){e=Math.floor(e)+.5;var r=475+(e-this.toJD(475,1,1))/365.242197,t=Math.floor(r);t<=0&&t--,e>this.toJD(t,12,Lx(t)?30:29)&&(t++,t===0&&t++);var a=e-this.toJD(t,1,1)+1,n=a<=186?Math.ceil(a/31):Math.ceil((a-6)/30),i=e-this.toJD(t,n,1)+1;return this.newDate(t,n,i)}});Nv.calendars.persian=Cx;Nv.calendars.jalali=Cx});var Eue=z(()=>{var sc=_n(),WVe=xn(),Dx=sc.instance();function hk(e){this.local=this.regionalOptions[e||""]||this.regionalOptions[""]}hk.prototype=new 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Bundled license information: + +native-promise-only/lib/npo.src.js: + (*! Native Promise Only + v0.8.1 (c) Kyle Simpson + MIT License: http://getify.mit-license.org + *) + +polybooljs/index.js: + (* + * @copyright 2016 Sean Connelly (@voidqk), http://syntheti.cc + * @license MIT + * @preserve Project Home: https://github.com/voidqk/polybooljs + *) + +ieee754/index.js: + (*! ieee754. BSD-3-Clause License. Feross Aboukhadijeh *) + +buffer/index.js: + (*! + * The buffer module from node.js, for the browser. + * + * @author Feross Aboukhadijeh + * @license MIT + *) + +safe-buffer/index.js: + (*! safe-buffer. MIT License. Feross Aboukhadijeh *) + +assert/build/internal/util/comparisons.js: + (*! + * The buffer module from node.js, for the browser. + * + * @author Feross Aboukhadijeh + * @license MIT + *) + +object-assign/index.js: + (* + object-assign + (c) Sindre Sorhus + @license MIT + *) +*/ + +window.Plotly = Plotly; +return Plotly; +})); \ No newline at end of file diff --git a/gui/vendor/plotly.css b/gui/vendor/plotly.css new file mode 100644 index 00000000..415af14b --- /dev/null +++ b/gui/vendor/plotly.css @@ -0,0 +1,49 @@ +/* Static copy of the runtime rules installed by plotly-cartesian.min.js 4.1.2. + Keeping them same-origin lets the application retain style-src 'self'. */ +.js-plotly-plot .plotly,.js-plotly-plot .plotly div{direction:ltr;font-family:"Open Sans",verdana,arial,sans-serif;margin:0;padding:0;border:0} +.js-plotly-plot .plotly input,.js-plotly-plot .plotly button{font-family:"Open Sans",verdana,arial,sans-serif} +.js-plotly-plot .plotly input:focus,.js-plotly-plot .plotly 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.modebar-group{float:left;display:inline-block;box-sizing:border-box;padding-left:8px;position:relative;vertical-align:middle;white-space:nowrap} +.js-plotly-plot .plotly .modebar-group a{display:grid;place-content:center} +.js-plotly-plot .plotly .modebar-btn{position:relative;font-size:16px;padding:3px 4px;height:22px;cursor:pointer;line-height:normal;box-sizing:border-box;border:none;background:transparent} +.js-plotly-plot .plotly .modebar-btn svg{position:relative} +.js-plotly-plot .plotly .modebar-btn:focus-visible{outline:1px solid #000;outline-offset:1px;border-radius:3px} +.js-plotly-plot .plotly .modebar.vertical{display:flex;flex-flow:column wrap;align-content:flex-end;max-height:100%} +.js-plotly-plot .plotly .modebar.vertical svg{top:-1px} +.js-plotly-plot .plotly .modebar.vertical .modebar-group{display:block;float:none;padding-left:0;padding-bottom:8px} +.js-plotly-plot .plotly .modebar.vertical .modebar-group .modebar-btn{display:block;text-align:center} +.js-plotly-plot .plotly [data-title]::before,.js-plotly-plot .plotly [data-title]::after{position:absolute;transform:translate3d(0,0,0);display:none;opacity:0;z-index:1001;pointer-events:none;top:110%;right:50%} +.js-plotly-plot .plotly [data-title]:hover::before,.js-plotly-plot .plotly [data-title]:hover::after{display:block;opacity:1} +.js-plotly-plot .plotly [data-title]::before{content:"";background:transparent;border:6px solid transparent;border-bottom-color:#69738a;z-index:1002;margin-top:-12px;margin-right:-6px} +.js-plotly-plot .plotly [data-title]::after{content:attr(data-title);background:#69738a;color:#fff;padding:8px 10px;font-size:12px;line-height:12px;white-space:nowrap;margin-right:-18px;border-radius:2px} +.js-plotly-plot .plotly .vertical [data-title]::before,.js-plotly-plot .plotly .vertical [data-title]::after{top:0;right:200%} +.js-plotly-plot .plotly .vertical [data-title]::before{border-color:transparent transparent transparent #69738a;margin-top:8px;margin-right:-30px} diff --git a/scripts/wasm/stage.sh b/scripts/wasm/stage.sh index 040744ba..62b6cb3c 100644 --- a/scripts/wasm/stage.sh +++ b/scripts/wasm/stage.sh @@ -25,13 +25,16 @@ PYSOURCE ) vienna_source="$build/sources/vienna-$vienna_version-$vienna_sha256/ViennaRNA-$vienna_version" mkdir -p "$site/licenses" -cp -R "$repo/gui/assets" "$repo/gui/examples" "$site/" -for file in index.html styles.css app.js mark.svg protocol.js runner.js results.js options.js columns.js archive.js sessions.js visualization.js parameter-file.js uploads.js; do +cp -R "$repo/gui/assets" "$repo/gui/examples" "$repo/gui/vendor" "$site/" +test "$(sha256sum "$repo/gui/vendor/plotly-cartesian.min.js" | cut -d' ' -f1)" = "aaf12ff1d4671f7e93f6df4291651ab4ca6b76c0ea5f1576ec1030e3c2819a20" +test "$(sha256sum "$repo/gui/vendor/plotly.css" | cut -d' ' -f1)" = "3bcf2679b557067d8a3492b74092e946544d1cb8b2a72f278bcba95df59afd33" +for file in index.html styles.css app.js mark.svg protocol.js runner.js results.js options.js columns.js archive.js sessions.js visualization.js output-visualization.js parameter-file.js uploads.js; do cp "$repo/gui/$file" "$site/$file" done cp "$repo/gui/intarna-worker.js" "$site/intarna-worker.js" touch "$site/.nojekyll" cp "$repo/src/bin/nlohmann/LICENSE.MIT" "$site/licenses/nlohmann-json.txt" +cp "$repo/gui/vendor/plotly-LICENSE.txt" "$site/licenses/Plotly.txt" cp "$repo/LICENSE" "$site/licenses/IntaRNA.txt" cp "$repo/src/easylogging++.LICENCE.txt" "$site/licenses/easylogging.txt" cp "$repo/src/mdspan/LICENSE" "$site/licenses/mdspan.txt" @@ -50,10 +53,11 @@ cat > "$site/licenses/index.html" <IntaRNA licenses

IntaRNA and third-party notices

IntaRNA: Bioinformatics Group of Prof. Backofen, University of Freiburg.
ViennaRNA: authors and Institute for Theoretical Chemistry, University of Vienna.

-

This distribution uses ViennaRNA $vienna_version, Boost 1.87.0, zlib 1.3.1, bundled dlib ${dlib_directory#dlib-}, Kokkos mdspan, Easylogging++ and the Emscripten 4.0.23 runtime.

+

This distribution uses ViennaRNA $vienna_version, Boost 1.87.0, zlib 1.3.1, bundled dlib ${dlib_directory#dlib-}, Plotly.js 4.1.2, Kokkos mdspan, Easylogging++ and the Emscripten 4.0.23 runtime.

  • IntaRNA
  • ViennaRNA
  • nlohmann/json
    • +
  • Plotly.js
  • Boost
  • zlib
  • dlib
  • Naview
  • Kokkos mdspan
  • Easylogging++
    • diff --git a/scripts/wasm/test-browser.py b/scripts/wasm/test-browser.py index d30a265f..8acffe3d 100644 --- a/scripts/wasm/test-browser.py +++ b/scripts/wasm/test-browser.py @@ -18,7 +18,9 @@ browser = getattr(playwright, args.browser).launch(headless=True) page = browser.new_page(viewport={'width': 1440, 'height': 1100}) errors = [] + csp_errors = [] page.on('pageerror', lambda error: errors.append(str(error))) + page.on('console', lambda message: csp_errors.append(message.text) if message.type == 'error' and ('Content Security Policy' in message.text or 'Refused to apply inline style' in message.text) else None) # Keep browser tests offline and inspect the exact third-party URL separately. visualization_urls = [] def viewer(route): @@ -262,6 +264,7 @@ def predict(): # Reference prediction, selectable CSV output and independent table visibility. fill('outNumber', 10) + open_group('csv-options') page.locator('#outCsvSort').select_option('E') predict() expect(rows).to_have_count(10) @@ -349,9 +352,26 @@ def predict(): predict() expect(rows).to_have_count(2) assert rows.first.locator('td').all_text_contents()[1:7] == ['target', '-5', '5', 'q1', '-3', '7'] - expect(active.locator('[data-role=file-list] details')).to_have_count(2) - active.locator('[data-role=file-list] summary').first.click() - expect(active.locator('[data-role=file-list] pre').first).to_contain_text('minE') + output_files = active.locator('[data-role=file-list] details') + expect(output_files).to_have_count(2) + expect(output_files.nth(0).locator('summary')).to_contain_text('target : q1') + expect(output_files.nth(1).locator('summary')).to_contain_text('target : q2') + output_files.first.locator('summary').click() + expect(output_files.first.get_by_role('tab', name='Visualization')).to_have_attribute('aria-selected', 'true') + expect(output_files.first.locator('.js-plotly-plot')).to_be_visible(timeout=30000) + expect(output_files.first.locator('.gtitle')).to_contain_text('q1') + if args.screenshot: + path = Path(args.screenshot) + page.screenshot(path=str(path.with_name(f'{path.stem}-additional-output.png')), full_page=True) + with page.expect_download(timeout=30000) as image: + output_files.first.get_by_role('button', name='Export PNG').click() + assert Path(image.value.path()).read_bytes().startswith(b'\x89PNG\r\n\x1a\n') + output_files.first.get_by_role('tab', name='File Content').click() + expect(output_files.first.locator('pre')).to_be_visible() + expect(output_files.first.locator('pre')).to_contain_text('minE') + with page.expect_download() as output_download: + output_files.first.get_by_role('button', name=re.compile('^Download qMinE')).click() + assert 'minE' in Path(output_download.value.path()).read_text() archive = download_archive() assert len([name for name in archive if name.startswith('qMinE')]) == 2 saved = json.loads(archive['parameter.json']) @@ -616,5 +636,6 @@ def predict(): page.wait_for_load_state('networkidle') expect(sessions).to_have_count(0) assert errors == [], errors + assert csp_errors == [], csp_errors browser.close() print(f'{args.browser}: real WASM, groups/defaults/versions, prediction/evaluation, FASTA/coordinates, tabs/keyboard, visualization URLs/selection, ZIP replay contents, columns/reports, mobile, abort/recovery and retained session lifecycle passed') From 4bcb4e8051c08b69ffbb89ce36a7a4be52f29df7 Mon Sep 17 00:00:00 2001 From: AlexanderMitrofanov Date: Mon, 26 Oct 2026 15:48:14 +0100 Subject: [PATCH 5/5] fix(gui): address PR 303 review refinements --- ChangeLog | 13 +++++++++ gui/app.js | 15 ++++++++-- gui/docs/json-workflow.md | 3 +- gui/docs/step3-frontend-ui.md | 3 ++ gui/docs/step4-results-and-deployment.md | 4 ++- gui/index.html | 2 +- gui/styles.css | 35 +++++++++++++++++++----- scripts/wasm/test-browser.py | 25 +++++++++++++++++ 8 files changed, 88 insertions(+), 12 deletions(-) diff --git a/ChangeLog b/ChangeLog index 4af33522..54b1340f 100644 --- a/ChangeLog +++ b/ChangeLog @@ -14,6 +14,9 @@ ## Interface and handling +- refine GUI seed and CSV control widths, filter examples by task, cap result + table height and use dark active tabs for additional output views (PR #303 review) + - compact and left-align GUI parameter rows, split CSV controls into their own tab, describe every additional output format and plot energy/probability files with sequence names, source tabs and PNG export (PR #287 review) @@ -292,6 +295,16 @@ energies, restricted partition sums, and trackers. ################################################################################ ################################################################################ +261026 Alexander Mitrofanov + * gui/app.js, gui/{index.html,styles.css}, scripts/wasm/test-browser.py + * place Explicit seeds beside a half-width Seed constraint selector and halve + the CSV sort selector width; verify desktop/mobile control geometry + * show only examples for the selected task, retain complete CSV downloads while + scrolling result tables above 500 px, and match output tab selection styling + to the parameter tabs (PR #303 maintainer review) + * gui/docs/{json-workflow,step3-frontend-ui,step4-results-and-deployment}.md + * document task-specific examples, compact controls and the bounded result table + 261026 Alexander Mitrofanov * gui/{app,options,sessions,output-visualization}.js, gui/{index.html,styles.css} diff --git a/gui/app.js b/gui/app.js index d0c9cdbf..c95fcff2 100644 --- a/gui/app.js +++ b/gui/app.js @@ -90,16 +90,22 @@ function fieldRow(body, fields, suffix = '') { for (const definition of GROUPS) { const body = group(definition.key, definition.label); if (definition.key === 'seed-options') { + const primary = element('div', '', 'seed-primary-row'); const wrapper = element('div', '', 'field seed-mode'); const label = element('label', 'Seed constraint'); label.htmlFor = 'seed-mode'; const select = element('select'); select.id = 'seed-mode'; for (const [value, name] of [['none', 'Disable seed constraint'], ['explicit', 'Explicit seed'], ['identify', 'Identify seeds']]) { const option = element('option', name); option.value = value; select.append(option); } - select.value = 'identify'; wrapper.append(label, select); body.append(wrapper); + select.value = 'identify'; wrapper.append(label, select); + primary.append(wrapper, renderField(FIELDS.find((field) => field.key === 'seedTQ'))); + body.append(primary); } if (definition.rows) { - for (const row of definition.rows) fieldRow(body, row); + for (const row of definition.rows) { + if (definition.key === 'seed-options' && row[0].key === 'seedTQ') continue; + fieldRow(body, row); + } } else fieldRow(body, definition.fields); if (definition.strand) { const p = definition.strand; @@ -173,6 +179,9 @@ function updateLength(name) { } function updateAvailability() { const evaluation = getTask() === 'evaluation'; + for (const button of byId('example-options').querySelectorAll('[data-example-task]')) { + button.hidden = button.dataset.exampleTask !== getTask(); + } byId('evaluation-input').hidden = !evaluation; byId('task-help').textContent = evaluation ? 'Evaluate supplied structures for one query and one target. Prediction constraints are ignored.' : 'Predict interactions for all query–target sequence pairs.'; byId('compute').textContent = evaluation ? 'Evaluate interactions' : 'Compute interactions'; @@ -314,6 +323,7 @@ async function loadExamples() { container.replaceChildren(); for (const example of examples) { const button = element('button'); button.type = 'button'; + button.dataset.exampleTask = example.request.task; button.append(element('strong', example.name), element('span', example.description)); button.addEventListener('click', () => { if (byId('inputs').disabled) return; @@ -322,6 +332,7 @@ async function loadExamples() { }); container.append(button); } + updateAvailability(); } catch (error) { container.replaceChildren(element('p', `${error.message} Reload to try again.`, 'input-help')); } } loadExamples(); diff --git a/gui/docs/json-workflow.md b/gui/docs/json-workflow.md index df5f7dfb..1c2d9dee 100644 --- a/gui/docs/json-workflow.md +++ b/gui/docs/json-workflow.md @@ -68,7 +68,8 @@ uses native defaults for omitted parameters. Inactive controls keep their edits in the form for switching modes, but their values are omitted from executed and stored settings. Previously computed sessions remain available. Empty FASTA fields show the short demonstration sequences as placeholders only. The Examples -disclosure menu follows the Input Parameters label. +disclosure menu follows the Input Parameters label and lists only examples for +the selected Prediction or Evaluation task. Maintainers edit `gui/examples/index.json` (an array of local JSON filenames). Each listed file contains `name`, `description`, and `configuration`, where the diff --git a/gui/docs/step3-frontend-ui.md b/gui/docs/step3-frontend-ui.md index 59466b2b..3e41faf5 100644 --- a/gui/docs/step3-frontend-ui.md +++ b/gui/docs/step3-frontend-ui.md @@ -18,6 +18,9 @@ are at most 9 rem wide within bounded, left-aligned row grids; select/text input use compact type-specific tracks and text/data fields retain useful width. Rows keep their scientific grouping without stretching across the complete panel, use 16 px horizontal gaps and bottom-align labels above their controls. +The Seed tab places the constraint selector (12 rem) beside Explicit seeds on +desktop; the CSV sort selector uses a 19 rem track. Both controls stack at mobile +widths. The institutional link reads “Bioinformatics - University of Freiburg” and opens the group website. Footer and table notes use the available width, wrapping only when the viewport requires it. diff --git a/gui/docs/step4-results-and-deployment.md b/gui/docs/step4-results-and-deployment.md index c87d1b58..451181bf 100644 --- a/gui/docs/step4-results-and-deployment.md +++ b/gui/docs/step4-results-and-deployment.md @@ -23,7 +23,9 @@ This is relative suboptimality, not a free-energy change or probability. Every heading is a keyboard-operable sort button with `aria-sort`. Search covers all returned values. A separate checklist shows/hides table columns after the run; it does not change selected CSV output. All identifiers, output previews -and diagnostics render with `textContent`. Selected extra files appear below the +and diagnostics render with `textContent`. The table has a 500 px maximum height +with vertical scrolling for longer results and a sticky heading; CSV downloads +still contain every selected row. Selected extra files appear below the table with their original filename, covered sequence/sequence-pair names, a header-level download, and bounded text previews, including SVG source. Empty output is successful and still permits CSV/accessibility downloads. diff --git a/gui/index.html b/gui/index.html index 08878a27..275f8b1f 100644 --- a/gui/index.html +++ b/gui/index.html @@ -75,7 +75,7 @@