From bfb2f20dd0733b66eff2824fab0f345039848e2b Mon Sep 17 00:00:00 2001 From: Oliver Gurney-Champion <7846269+oliverchampion@users.noreply.github.com> Date: Wed, 28 Oct 2026 22:23:37 +0100 Subject: [PATCH] Update references in TF and literature updated to be homogenous across TF and literature page. Solve request 204 --- docs/ismrmabstracts.md | 48 +++++++++++++++++++++--------------------- docs/osipipapers.md | 16 +++++++------- docs/tf/tf1-1.md | 8 +++---- docs/tf/tf2-2.md | 6 +++--- docs/tf/tf2-3.md | 6 +++--- docs/tf/tf2-4.md | 3 +++ docs/tf/tf2-6.md | 4 ++-- docs/tf/tf4-1.md | 4 ++-- docs/tf/tf4-2.md | 6 +++--- docs/tf/tf4-6.md | 2 +- docs/tf/tf5-3.md | 2 +- docs/tf/tf6-1.md | 9 +++++--- docs/tf/tf6-2.md | 9 ++++---- docs/tf/tf6-3.md | 2 +- 14 files changed, 66 insertions(+), 59 deletions(-) diff --git a/docs/ismrmabstracts.md b/docs/ismrmabstracts.md index e7e2a9d4..73098ef8 100644 --- a/docs/ismrmabstracts.md +++ b/docs/ismrmabstracts.md @@ -4,49 +4,49 @@ OSIPI-related abstracts presented at ISMRM annual meetings, grouped by year and ## Invited presentations -- van Houdt P. Perfusion & Permeability: Applications. [ISMRM 2023](https://cds.ismrm.org/protected/23MProceedings/PDFfiles/E4495_Yj6yvyRcE.html) +- van Houdt P. [Perfusion & Permeability: Applications.](https://cds.ismrm.org/protected/23MProceedings/PDFfiles/E4495_Yj6yvyRcE.html) ISMRM 2023 - Petr J. ASL-BIDS and OSIPI Pipeline Inventory. MRI Together, 2022. - Petr J. OSIPI Inventory of ASL Pipelines. ISMRM Workshop on Perfusion MRI: From Head to Toe, 2022. -- Tadimalla S. OSIPI Experience on Scientific. [MRI Together 2021](https://www.youtube.com/watch?v=yGBiDGBtJGY). -- Berks M. Open Science Initiative for Perfusion Imaging (OSIPI): a global collaboration of researchers committed to improving software in their field. [SeptembRSE 2021](https://youtube.com/watch?v=dk9SzgCCH4s). +- Tadimalla S. [OSIPI Experience on Scientific.](https://www.youtube.com/watch?v=yGBiDGBtJGY) MRI Together 2021. +- Berks M. [Open Science Initiative for Perfusion Imaging (OSIPI): a global collaboration of researchers committed to improving software in their field.](https://youtube.com/watch?v=dk9SzgCCH4s) SeptembRSE 2021. ## 2026 -- TF 4.6 — An Online ISMRM-OSIPI Platform for Automated and Standardized Reporting of ASL MRI Acquisition Parameters. [ISMRM 2026, abstract 567-03-002](http://echo.ismrm.org/p/ISMRM2026/567-03-002) -- TF 6.3 — Reproducibility of intravoxel incoherent motion imaging: impact of the fitting algorithm. [ISMRM 2026, abstract 668-03-013](http://echo.ismrm.org/p/ISMRM2026/668-03-013) +- TF 4.6 — [An Online ISMRM-OSIPI Platform for Automated and Standardized Reporting of ASL MRI Acquisition Parameters.](http://echo.ismrm.org/p/ISMRM2026/567-03-002) ISMRM 2026, abstract 567-03-002 +- TF 6.3 — [Reproducibility of intravoxel incoherent motion imaging: impact of the fitting algorithm.](http://echo.ismrm.org/p/ISMRM2026/668-03-013) ISMRM 2026, abstract 668-03-013 ## 2025 -- TF 2.6 — ISMRM Open Science Initiative for Perfusion Imaging (OSIPI): Composite Python Library for ASL Image Processing. [ISMRM 2025, abstract 3692](https://cds.ismrm.org/protected/25MProceedings/PDFfiles/3692_Nv2N2aQQv.html) -- TF 2.6 — The OSIPI Python Package for Standardized Perfusion MRI Analysis. [ISMRM workshop on Perfusion MRI 2025](https://cds.ismrm.org/protected/Perfusion25/abstracts/Nasser.pdf) +- TF 2.6 — [ISMRM Open Science Initiative for Perfusion Imaging (OSIPI): Composite Python Library for ASL Image Processing.](https://cds.ismrm.org/protected/25MProceedings/PDFfiles/3692_Nv2N2aQQv.html) ISMRM 2025, abstract 3692 +- TF 2.6 — [The OSIPI Python Package for Standardized Perfusion MRI Analysis.](https://cds.ismrm.org/protected/Perfusion25/abstracts/Nasser.pdf) ISMRM workshop on Perfusion MRI 2025 - TF 4.6 — A user-friendly ISMRM-OSIPI online software tool for standardized and automated reporting of ASL acquisition parameters. ISMRM 2025 -- TF 4.6 — An Online ISMRM-OSIPI Tool for Standardized Reporting of ASL Acquisition Parameters. [ISMRM workshop on Perfusion MRI 2025](https://cds.ismrm.org/protected/Perfusion25/abstracts/Xu%20Hanliang.pdf) -- TF 5.3 — AURA: building ‘A User Repository of Artifacts for Perfusion Imaging’. [ESMRMB 2025, PA07](https://link.springer.com/article/10.1007/s10334-025-01300-z) +- TF 4.6 — [An Online ISMRM-OSIPI Tool for Standardized Reporting of ASL Acquisition Parameters.](https://cds.ismrm.org/protected/Perfusion25/abstracts/Xu%20Hanliang.pdf) ISMRM workshop on Perfusion MRI 2025 +- TF 5.3 — [AURA: building ‘A User Repository of Artifacts for Perfusion Imaging’.](https://link.springer.com/article/10.1007/s10334-025-01300-z) ESMRMB 2025, PA07 ## 2024 -- Towards reproducible perfusion MRI analysis: the ISMRM Open Science Initiative for Perfusion Imaging. [ESMRMB 2024, abstract 419](https://link.springer.com/article/10.1007/s10334-024-01191-6) +- [Towards reproducible perfusion MRI analysis: the ISMRM Open Science Initiative for Perfusion Imaging.](https://link.springer.com/article/10.1007/s10334-024-01191-6) ESMRMB 2024, abstract 419 - Towards reproducible perfusion MRI analysis: the ISMRM Open Science Initiative for Perfusion Imaging. MR in RT 2024 -- TF2.4 — Towards Reproducible Intravoxel Incoherent Motion (IVIM) Analysis: The ISMRM Open Science Initiative for Perfusion Imaging. [ISMRM 2024, abstract 0540](https://cds.ismrm.org/protected/24MProceedings/PDFfiles/0540_78FxmiQdO.html) -- TF6.1 — ISMRM - Open Science Initiative for Perfusion Imaging (OSIPI): The multi-delay Arterial Spin Labeling Challenge. [ISMRM 2024, abstract 4869](https://cds.ismrm.org/protected/24MProceedings/PDFfiles/4869_aHE9XdQeI.html) -- TF6.2 — The ISMRM Open Science Initiative for Perfusion Imaging (OSIPI): A Challenge for Reproducible DCE-MRI AI-based Analysis. [ISMRM 2024, abstract 0245](https://cds.ismrm.org/protected/24MProceedings/PDFfiles/0245_En1mDaR8b.html) +- TF2.4 — [Towards Reproducible Intravoxel Incoherent Motion (IVIM) Analysis: The ISMRM Open Science Initiative for Perfusion Imaging.](https://cds.ismrm.org/protected/24MProceedings/PDFfiles/0540_78FxmiQdO.html) ISMRM 2024, abstract 0540 +- TF6.1 — [ISMRM - Open Science Initiative for Perfusion Imaging (OSIPI): The multi-delay Arterial Spin Labeling Challenge.](https://cds.ismrm.org/protected/24MProceedings/PDFfiles/4869_aHE9XdQeI.html) ISMRM 2024, abstract 4869 +- TF6.2 — [The ISMRM Open Science Initiative for Perfusion Imaging (OSIPI): A Challenge for Reproducible DCE-MRI AI-based Analysis.](https://cds.ismrm.org/protected/24MProceedings/PDFfiles/0245_En1mDaR8b.html) ISMRM 2024, abstract 0245 ## 2023 - Open Science Initiative for Perfusion Imaging (OSIPI). Member-initiaited symposium on "The ISMRM Open: Promoting Open Science" ISMRM 2023 - OSIPI Pipeline & Software Inventory. PArt of the Member-Initiated Tutorials on "So You’ve Got ASL Data … Now What?" ISMRM 2023 -- TF6.1 — The ASL Challenge Reproduction Study: Replicating Findings from The OSIPI-ISMRM ASL MRI Challenge. [ISMRM 2023, abstract 0914](https://cds.ismrm.org/protected/23MProceedings/PDFfiles/2576_5y45zUR7T.html) +- TF6.1 — [The ASL Challenge Reproduction Study: Replicating Findings from The OSIPI-ISMRM ASL MRI Challenge.](https://cds.ismrm.org/protected/23MProceedings/PDFfiles/2576_5y45zUR7T.html) ISMRM 2023, abstract 0914 ## 2022 -- TF2.2 — The Open Science Initiative for Perfusion Imaging (OSIPI): ASL Code Library. [ISMRM 2022, abstract 0914](https://cds.ismrm.org/protected/22MProceedings/PDFfiles/0914.html) -- TF2.2 — OSIPI Inventory of ASL Pipelines. [ISMRM workshop on Perfusion MRI: from head tot toe.](https://www.ismrm.org/workshops/2022/Perfusion/) -- TF4.2 — DCE/DSC Perfusion Imaging Lexicon & Reporting Framework. [ISMRM workshop on Perfusion MRI: from head tot toe.](https://www.ismrm.org/workshops/2022/Perfusion/) -- TF6.1 — The Open Science Initiative for Perfusion Imaging (OSIPI): Results from the ASL MRI Challenge. [ISMRM 2022, abstract 0910](https://cds.ismrm.org/protected/22MProceedings/PDFfiles/0910.html) -- TF6.1 — OSIPI-DCE Challenge: Preliminary Results. [ISMRM workshop on Perfusion MRI: from head tot toe.](https://www.ismrm.org/workshops/2022/Perfusion/) -- TF6.2 — The Open Science Initiative for Perfusion Imaging (OSIPI): Early Results from the DCE-MRI Challenge. [ISMRM 2022, abstract 0047](https://cds.ismrm.org/protected/22MProceedings/PDFfiles/0047.html) -- TF6.2 — Results of the OSIPI Challenges (ASL). [ISMRM workshop on Perfusion MRI: from head tot toe.](https://www.ismrm.org/workshops/2022/Perfusion/) +- TF2.2 — [The Open Science Initiative for Perfusion Imaging (OSIPI): ASL Code Library.](https://cds.ismrm.org/protected/22MProceedings/PDFfiles/0914.html) ISMRM 2022, abstract 0914 +- TF2.2 — [OSIPI Inventory of ASL Pipelines.](https://www.ismrm.org/workshops/2022/Perfusion/) ISMRM workshop on Perfusion MRI: from head tot toe. +- TF4.2 — [DCE/DSC Perfusion Imaging Lexicon & Reporting Framework.](https://www.ismrm.org/workshops/2022/Perfusion/) ISMRM workshop on Perfusion MRI: from head tot toe. +- TF6.1 — [The Open Science Initiative for Perfusion Imaging (OSIPI): Results from the ASL MRI Challenge.](https://cds.ismrm.org/protected/22MProceedings/PDFfiles/0910.html) ISMRM 2022, abstract 0910 +- TF6.1 — [Results of the OSIPI Challenges (ASL).](https://www.ismrm.org/workshops/2022/Perfusion/) ISMRM workshop on Perfusion MRI: from head tot toe. +- TF6.2 — [OSIPI-DCE Challenge: Preliminary Results.](https://www.ismrm.org/workshops/2022/Perfusion/) ISMRM workshop on Perfusion MRI: from head tot toe. +- TF6.2 — [The Open Science Initiative for Perfusion Imaging (OSIPI): Early Results from the DCE-MRI Challenge.](https://cds.ismrm.org/protected/22MProceedings/PDFfiles/0047.html) ISMRM 2022, abstract 0047 ## 2021 -- TF1.1 — The Open Source Initiative for Perfusion Imaging (OSIPI): ASL Pipeline inventory. [ISMRM 2021, abstract 2713](https://cds.ismrm.org/protected/21MProceedings/PDFfiles/2713.html) -- TF6.1 — The Open Source Initiative for Perfusion Imaging (OSIPI) ASL MRI Challenge. [ISMRM 2021, abstract 2714](https://cds.ismrm.org/protected/21MProceedings/PDFfiles/2714.html) -- TF6.2 — The Open Source Initiative for Perfusion Imaging (OSIPI): DCE-MRI Challenge. [ISMRM 2021, abstract 1094](https://cds.ismrm.org/protected/21MProceedings/PDFfiles/1094.html) +- TF1.1 — [The Open Source Initiative for Perfusion Imaging (OSIPI): ASL Pipeline inventory.](https://cds.ismrm.org/protected/21MProceedings/PDFfiles/2713.html) ISMRM 2021, abstract 2713 +- TF6.1 — [The Open Source Initiative for Perfusion Imaging (OSIPI) ASL MRI Challenge.](https://cds.ismrm.org/protected/21MProceedings/PDFfiles/2714.html) ISMRM 2021, abstract 2714 +- TF6.2 — [The Open Source Initiative for Perfusion Imaging (OSIPI): DCE-MRI Challenge.](https://cds.ismrm.org/protected/21MProceedings/PDFfiles/1094.html) ISMRM 2021, abstract 1094 diff --git a/docs/osipipapers.md b/docs/osipipapers.md index afd6fc01..724c107c 100644 --- a/docs/osipipapers.md +++ b/docs/osipipapers.md @@ -5,17 +5,17 @@ Here is a list of the peer-reviewed journal articles authored by OSIPI task forc ## Peer-reviewed papers -- Fan H, Mutsaerts HJMM, Anazodo U, Arteaga D, Baas KPA, Buchanan C, Camargo A, Keil VC, Lin Z, Lindner T, Hirschler L, Hu J, Padrela BE, Taghvaei M, Thomas DL, Dolui S, Petr J. ISMRM Open Science Initiative for Perfusion Imaging (OSIPI): ASL pipeline inventory. Magn Reson Med. 2023. doi:[10.1002/mrm.29869](https://doi.org/10.1002/mrm.29869) -- van Houdt PJ, Ragunathan S, Berks M, Ahmed Z, Kershaw LE, Gurney-Champion OJ, Tadimalla S, Arvidsson J, Sun Y, Kallehauge J, Dickie B, Lévy S, Bell L, Sourbron S, Thrippleton MJ. Contrast-agent-based perfusion MRI code repository and testing framework: ISMRM Open Science Initiative for Perfusion Imaging (OSIPI). Magn Reson Med. 2023;1-13. doi:[10.1002/mrm.29826](https://onlinelibrary.wiley.com/doi/full/10.1002/mrm.29826) -- Shalom ES, Kim H, van der Heijden RA, Ahmed Z, Patel R, Hormuth DA 2nd, DiCarlo JC, Yankeelov TE, Sisco NJ, Dortch RD, Stokes AM, Inglese M, Grech-Sollars M, Toschi N, Sahoo P, Singh A, Verma SK, Rathore DK, Kazerouni AS, Partridge SC, LoCastro E, Paudyal R, Wolansky IA, Shukla-Dave A, Schouten P, Gurney-Champion OJ, Jiřík R, Macíček O, Bartoš M, Vitouš J, Das AB, Kim SG, Bokacheva L, Mikheev A, Rusinek H, Berks M, Hubbard Cristinacce PL, Little RA, Cheung S, O'Connor JPB, Parker GJM, Moloney B, LaViolette PS, Bobholz S, Duenweg S, Virostko J, Laue HO, Sung K, Nabavizadeh A, Saligheh Rad H, Hu LS, Sourbron S, Bell LC, Fathi Kazerooni A. The ISMRM Open Science Initiative for Perfusion Imaging (OSIPI): Results from the OSIPI-Dynamic Contrast-Enhanced challenge. Magn Reson Med. 2023 Dec 19. doi:[10.1002/mrm.29909](https://doi.org/10.1002/mrm.29909) -- Suzuki Y, Clement P, Dai W, Dolui S, Fernández-Seara MA, Lindner T, Mutsaerts HJMM, Petr J, Shao X, Taso M, Thomas DL. ASL lexicon and reporting recommendations: A consensus report from the ISMRM Open Science Initiative for Perfusion Imaging (OSIPI). Magn Reson Med. 2023;91(5):1743-1760. doi:[10.1002/mrm.29815](https://doi.org/10.1002/mrm.29815) -- Dickie BR, Ahmed Z, Arvidsson J, Bell LC, Buckley DL, Debus C, Fedorov A, Floca R, Gutmann I, van der Heijden RA, van Houdt PJ, Sourbron S, Thrippleton MJ, Quarles C, Kompan IN. A community-endorsed open-source lexicon for contrast agent–based perfusion MRI: A consensus guidelines report from the ISMRM Open Science Initiative for Perfusion Imaging (OSIPI). Magn Reson Med. 2023;91(5):1761-1773. doi:[10.1002/mrm.29840](https://doi.org/10.1002/mrm.29840) -- Paschoal AM, Woods JG, Pinto J, Bron EE, Petr J, Kennedy McConnell FA, Bell L, Dounavi ME, Gould van Praag C, Mutsaerts HJMM, Oliver Taylor A, Zhao MY, Brumer I, Chan WSM, Toner J, Hu J, Zhang LX, Domingos C, Monteiro SP, Figueiredo P, Harms AGJ, Padrela BE, Tham C, Abdalle A, Croal PL, Anazodo U. Reproducibility of arterial spin labeling cerebral blood flow image processing: A report of the ISMRM open science initiative for perfusion imaging (OSIPI) and the ASL MRI challenge. Magn Reson Med. 2024;92(2):836-852. doi:[10.1002/mrm.30081](https://doi.org/10.1002/mrm.30081) +- [ISMRM Open Science Initiative for Perfusion Imaging (OSIPI): ASL pipeline inventory.](https://doi.org/10.1002/mrm.29869) Fan et al. Magn Reson Med. 2023. +- [Contrast-agent-based perfusion MRI code repository and testing framework: ISMRM Open Science Initiative for Perfusion Imaging (OSIPI).](https://onlinelibrary.wiley.com/doi/full/10.1002/mrm.29826) van Houdt et al. Magn Reson Med. 2023;1-13. +- [The ISMRM Open Science Initiative for Perfusion Imaging (OSIPI): Results from the OSIPI-Dynamic Contrast-Enhanced challenge.](https://doi.org/10.1002/mrm.29909) Shalom et al. Magn Reson Med. 2023 Dec 19. +- [ASL lexicon and reporting recommendations: A consensus report from the ISMRM Open Science Initiative for Perfusion Imaging (OSIPI).](https://doi.org/10.1002/mrm.29815) Suzuki et al. Magn Reson Med. 2023;91(5):1743-1760. +- [A community-endorsed open-source lexicon for contrast agent–based perfusion MRI: A consensus guidelines report from the ISMRM Open Science Initiative for Perfusion Imaging (OSIPI).](https://doi.org/10.1002/mrm.29840) Dickie et al. Magn Reson Med. 2023;91(5):1761-1773. +- [Reproducibility of arterial spin labeling cerebral blood flow image processing: A report of the ISMRM open science initiative for perfusion imaging (OSIPI) and the ASL MRI challenge.](https://doi.org/10.1002/mrm.30081) Paschoal et al. Magn Reson Med. 2024;92(2):836-852. ## Letter to the editor -- Bell LC, Suzuki Y, van Houdt PJ, Sourbron S, Mutsaerts HJMM. The road to the ISMRM OSIPI: A community-led initiative for reproducible perfusion MRI. Magn Reson Med. 2023;91(5):1740-1742. doi:[10.1002/mrm.29736](https://doi.org/10.1002/mrm.29736) +- [The road to the ISMRM OSIPI: A community-led initiative for reproducible perfusion MRI.](https://doi.org/10.1002/mrm.29736) Bell et al. Magn Reson Med. 2023;91(5):1740-1742. ## In preparation / under review -- Mora Álvarez MG, Zhou L, Wang Y, Zhao L, Dolui S, Taso M, Wang Z, Adebimpe A, Mutsaerts H, Madhuranthakam AJ. The Open Science Initiative for Perfusion Imaging (OSIPI) ASL Processing Code Library. 2023. (To be submitted to Magn Reson Med.) +- [The Open Science Initiative for Perfusion Imaging (OSIPI) ASL Processing Code Library.] Mora Álvarez et al. (To be submitted to Magn Reson Med.) diff --git a/docs/tf/tf1-1.md b/docs/tf/tf1-1.md index 9f457b16..11a7faf5 100644 --- a/docs/tf/tf1-1.md +++ b/docs/tf/tf1-1.md @@ -13,10 +13,10 @@ This task force is currently expanding the ASL pipeline inventory by including m ## Publications -- Jan Petr. [ASL-BIDS and OSIPI Pipeline Inventory](https://www.youtube.com/live/4wsEodepyI8?si=kpfczDCG40tCbWuF). MRI Together, 2022. -- Jan Petr. OSIPI Inventory of ASL Pipelines. ISMRM Workshop on Perfusion MRI: From Head to Toe, 2022. -- ISMRM abstract 2021 — [The Open Source Initiative for Perfusion Imaging (OSIPI): ASL Pipeline inventory](https://cds.ismrm.org/protected/21MProceedings/PDFfiles/2713.html) -- Hongli Fan, Henk J. M. M. Mutsaerts, Udunna Anazodo, Daniel Arteaga, Koen P. A. Baas, Charlotte Buchanan, Aldo Camargo, Vera C. Keil, Zixuan Lin, Thomas Lindner, Lydiane Hirschler, Jian Hu, Beatriz E. Padrela, Mohammad Taghvaei, David L. Thomas, Sudipto Dolui, Jan Petr, ISMRM Open Science Initiative for Perfusion Imaging (OSIPI): ASL pipeline inventory, Magn Reson Med. 2023, doi: [https://doi.org/10.1002/mrm.29869](https://doi.org/10.1002/mrm.29869) +- [ASL-BIDS and OSIPI Pipeline Inventory.](https://www.youtube.com/live/4wsEodepyI8?si=kpfczDCG40tCbWuF) MRI Together, 2022. +- [OSIPI Inventory of ASL Pipelines](https://cds.ismrm.org/protected/Perfusion22/syllabi/Petr.pdf). [ISMRM Workshop on Perfusion MRI: From Head to Toe](https://www.ismrm.org/workshops/2022/Perfusion/), 2022. +- [The Open Source Initiative for Perfusion Imaging (OSIPI): ASL Pipeline inventory](https://cds.ismrm.org/protected/21MProceedings/PDFfiles/2713.html) ISMRM 2021 +- [ISMRM Open Science Initiative for Perfusion Imaging (OSIPI): ASL pipeline inventory](https://doi.org/10.1002/mrm.29869), Fan et al., Magn Reson Med. 2023 ## Resources diff --git a/docs/tf/tf2-2.md b/docs/tf/tf2-2.md index eefbd198..e46dd38c 100644 --- a/docs/tf/tf2-2.md +++ b/docs/tf/tf2-2.md @@ -24,6 +24,6 @@ If you want to know more about our ongoing project, please read our [two-year ro ## Publications -- The Open Science Initiative for Perfusion Imaging (OSIPI): ASL Code Library. [ISMRM 2022, abstract 0914](https://cds.ismrm.org/protected/22MProceedings/PDFfiles/0914.html) -- OSIPI Inventory of ASL Pipelines. [ISMRM workshop on Perfusion MRI: from head tot toe.](https://www.ismrm.org/workshops/2022/Perfusion/) -- Mora Álvarez M.G., Zhou L., Wang Y., Zhao L., Dolui S., Taso M., Wang Z., Adebimpe A., Mutsaerts H., and Madhuranthakam A.J. (2023). The Open Science Initiative for Perfusion Imaging (OSIPI) ASL Processing Code Library. To be submitted to MRM. +- [The Open Science Initiative for Perfusion Imaging (OSIPI): ASL Code Library.](https://cds.ismrm.org/protected/22MProceedings/PDFfiles/0914.html) ISMRM 2022, abstract 0914 +- [OSIPI Inventory of ASL Pipelines.](https://www.ismrm.org/workshops/2022/Perfusion/) ISMRM workshop on Perfusion MRI: from head tot toe. +- The Open Science Initiative for Perfusion Imaging (OSIPI) ASL Processing Code Library. Mora Álvarez et al. To be submitted to MRM. diff --git a/docs/tf/tf2-3.md b/docs/tf/tf2-3.md index 829dc52b..c8ff6c31 100644 --- a/docs/tf/tf2-3.md +++ b/docs/tf/tf2-3.md @@ -21,9 +21,9 @@ Although we have a large number of contributions, there are still some gaps in f ## Publications -- van Houdt PJ, Ragunathan S, Berks M, Ahmed Z, Kershaw LE, Gurney-Champion OJ, Tadimalla S, Arvidsson J, Sun Y, Kallehauge J, Dickie B, Lévy S, Bell L, Sourbron S, Thrippleton MJ. Contrast‐agent‐based perfusion MRI code repository and testing framework: ISMRM Open Science Initiative for Perfusion Imaging (OSIPI). Magn Reson Med. 2023;1-13. doi: [10.1002/mrm.29826](https://onlinelibrary.wiley.com/doi/full/10.1002/mrm.29826) (also presented at ISMRM2022 in London and at ISMRM Benelux 2022) -- TF lead Sirisha Tadimalla talking about OSIPI at MRI Together in 2021: [MRI Together 2021 – D1 (Pacific) – Hands-on: OSIPI Experience on Scientific… (S. Tadimalla)](https://www.youtube.com/watch?v=yGBiDGBtJGY) -- Berks, M. Open Science Initiative for Perfusion Imaging (OSIPI): a global collaboration of researchers committed to improving software in their field. SeptembRSE 2021 [SeptembRSE: 13th September – Afternoon](https://youtube.com/watch?v=dk9SzgCCH4s&ab_channel=SocietyofResearchSoftwareEngineering#t=22m35s…) +- [Contrast‐agent‐based perfusion MRI code repository and testing framework: ISMRM Open Science Initiative for Perfusion Imaging (OSIPI)](https://onlinelibrary.wiley.com/doi/full/10.1002/mrm.29826) van Houdt et al. Magn Reson Med. 2023;1-13. (also presented at ISMRM2022 in London and at ISMRM Benelux 2022) +- [D1 (Pacific) – Hands-on: OSIPI Experience on Scientific…](https://www.youtube.com/watch?v=yGBiDGBtJGY) MRI Together 2021 +- [Open Science Initiative for Perfusion Imaging (OSIPI): a global collaboration of researchers committed to improving software in their field.](https://youtube.com/watch?v=dk9SzgCCH4s&ab_channel=SocietyofResearchSoftwareEngineering#t=22m35s…) SeptembRSE: 13th September – Afternoon ## Resources diff --git a/docs/tf/tf2-4.md b/docs/tf/tf2-4.md index 42eb0697..9229e489 100644 --- a/docs/tf/tf2-4.md +++ b/docs/tf/tf2-4.md @@ -23,3 +23,6 @@ If you have IVIM code you want to share, please follow the [contribution guideli A subfolder of the repository hosts digital phantom data which can serve as a benchmark for future developments. [🧪 Go to the DRO data](https://github.com/OSIPI/TF2.4_IVIM-MRI_CodeCollection/tree/main/phantoms) + +## Publications +- TF2.4 — [Towards Reproducible Intravoxel Incoherent Motion (IVIM) Analysis: The ISMRM Open Science Initiative for Perfusion Imaging.](https://cds.ismrm.org/protected/24MProceedings/PDFfiles/0540_78FxmiQdO.html) ISMRM 2024, abstract 0540 diff --git a/docs/tf/tf2-6.md b/docs/tf/tf2-6.md index 7a9e5712..5ac63b2b 100644 --- a/docs/tf/tf2-6.md +++ b/docs/tf/tf2-6.md @@ -32,6 +32,6 @@ If you want to know more about our ongoing project, please read our [two-year ro - [OSIPY dashboard](https://osipi.github.io/dashboard/) ## Publications -- ISMRM Open Science Initiative for Perfusion Imaging (OSIPI): Composite Python Library for ASL Image Processing. [ISMRM 2025, abstract 3692](https://cds.ismrm.org/protected/25MProceedings/PDFfiles/3692_Nv2N2aQQv.html) -- The OSIPI Python Package for Standardized Perfusion MRI Analysis. [ISMRM workshop on Perfusion MRI 2025](https://cds.ismrm.org/protected/Perfusion25/abstracts/Nasser.pdf) +- TF 2.6 — [ISMRM Open Science Initiative for Perfusion Imaging (OSIPI): Composite Python Library for ASL Image Processing.](https://cds.ismrm.org/protected/25MProceedings/PDFfiles/3692_Nv2N2aQQv.html) ISMRM 2025, abstract 3692 +- TF 2.6 — [The OSIPI Python Package for Standardized Perfusion MRI Analysis.](https://cds.ismrm.org/protected/Perfusion25/abstracts/Nasser.pdf) ISMRM workshop on Perfusion MRI 2025 diff --git a/docs/tf/tf4-1.md b/docs/tf/tf4-1.md index 9b1229ef..3045b240 100644 --- a/docs/tf/tf4-1.md +++ b/docs/tf/tf4-1.md @@ -27,5 +27,5 @@ In the roadmap 2023-2025, TF4.1 is transferring the current Lexicon to a user-fr ## Publications -- ISMRM abstract 2022 — [Open Science Initiative for Perfusion Imaging (OSIPI): Arterial Spin Labeling Imaging and Analysis Lexicon and Reporting Recommendations](https://cds.ismrm.org/protected/22MProceedings/PDFfiles/0908.html) -- Suzuki Y, Clement P, Dai W, et al. ASL lexicon and reporting recommendations: A consensus report from the ISMRM Open Science Initiative for Perfusion Imaging (OSIPI). Magn Reson Med. 2023; 1-18. doi: [10.1002/mrm.29815](https://doi.org/10.1002/mrm.29815) +- [Open Science Initiative for Perfusion Imaging (OSIPI): Arterial Spin Labeling Imaging and Analysis Lexicon and Reporting Recommendations](https://cds.ismrm.org/protected/22MProceedings/PDFfiles/0908.html) SMRM abstract 2022 +- [ASL lexicon and reporting recommendations: A consensus report from the ISMRM Open Science Initiative for Perfusion Imaging (OSIPI).](https://doi.org/10.1002/mrm.29815) Suzuki et al. Magn Reson Med. 2023; 1-18. diff --git a/docs/tf/tf4-2.md b/docs/tf/tf4-2.md index f1f550f1..492bf665 100644 --- a/docs/tf/tf4-2.md +++ b/docs/tf/tf4-2.md @@ -24,6 +24,6 @@ The task force has completed its 2nd 2-year [roadmap](https://docs.google.com/do ## Publications -- ISMRM abstract 2021 — [The Open Source Initiative for Perfusion Imaging (OSIPI): Contrast-based perfusion lexicon and reporting recommendations](https://cds.ismrm.org/protected/21MProceedings/PDFfiles/1093.html) -- ISMRM abstract 2022 — [Open Science Initiative for Perfusion Imaging (OSIPI): DCE/DSC lexicon for reporting perfusion analysis pipelines](https://cds.ismrm.org/protected/22MProceedings/PDFfiles/0803.html) -- Dickie B.R, Ahmed Z, Arvidsson J, Bell L, Buckley DL, Debus C, Fedorov A, Floca R, Gutmann I, van der Heijden RA, van Houdt PJ, Sourbron S, Thrippleton MJ, Quarles C, Kompan I. A community-endorsed open-source lexicon for contrast-agent based perfusion MRI (CAPLEX): A consensus guidelines report from the ISMRM Open Science Initiative for Perfusion Imaging (OSIPI). Mag Resn Med, 2023. doi: [10.1002/mrm.29840](https://doi.org/10.1002/mrm.29840) +- [The Open Source Initiative for Perfusion Imaging (OSIPI): Contrast-based perfusion lexicon and reporting recommendations](https://cds.ismrm.org/protected/21MProceedings/PDFfiles/1093.html) +- [DCE/DSC Perfusion Imaging Lexicon & Reporting Framework.](https://www.ismrm.org/workshops/2022/Perfusion/) ISMRM workshop on Perfusion MRI: from head tot toe. +- [A community-endorsed open-source lexicon for contrast agent–based perfusion MRI: A consensus guidelines report from the ISMRM Open Science Initiative for Perfusion Imaging (OSIPI).](https://doi.org/10.1002/mrm.29840) Dickie et al. Magn Reson Med. 2023;91(5):1761-1773. diff --git a/docs/tf/tf4-6.md b/docs/tf/tf4-6.md index ed58b952..7cd3854f 100644 --- a/docs/tf/tf4-6.md +++ b/docs/tf/tf4-6.md @@ -15,7 +15,7 @@ If you want to know more about our ongoing project, please read our [two-year ro ## Publications -- An Online ISMRM-OSIPI Platform for Automated and Standardized Reporting of ASL MRI Acquisition Parameters. [ISMRM 2026, abstract 567-03-002](http://echo.ismrm.org/p/ISMRM2026/567-03-002) +- [An Online ISMRM-OSIPI Platform for Automated and Standardized Reporting of ASL MRI Acquisition Parameters.](http://echo.ismrm.org/p/ISMRM2026/567-03-002) ISMRM 2026, abstract 567-03-002 - A user-friendly ISMRM-OSIPI online software tool for standardized and automated reporting of ASL acquisition parameters. ISMRM 2025 ## Resources diff --git a/docs/tf/tf5-3.md b/docs/tf/tf5-3.md index 780f8c19..8f6cd2a4 100644 --- a/docs/tf/tf5-3.md +++ b/docs/tf/tf5-3.md @@ -38,7 +38,7 @@ If you want to know more about our ongoing project, please read our [two-year ro ## Publications -- AURA: building ‘A User Repository of Artifacts for Perfusion Imaging’. [ESMRMB 2025, PA07](https://link.springer.com/article/10.1007/s10334-025-01300-z) +- [AURA: building ‘A User Repository of Artifacts for Perfusion Imaging’.](https://link.springer.com/article/10.1007/s10334-025-01300-z) ESMRMB 2025, PA07 ## Resources diff --git a/docs/tf/tf6-1.md b/docs/tf/tf6-1.md index 0da42535..63840dcf 100644 --- a/docs/tf/tf6-1.md +++ b/docs/tf/tf6-1.md @@ -30,6 +30,9 @@ The task force is in the process of launching the second ASL Challenge focusing ## Publications -- The Open Source Initiative for Perfusion Imaging (OSIPI) ASL MRI Challenge. [ISMRM 2021, abstract 2714](https://cds.ismrm.org/protected/21MProceedings/PDFfiles/2714.html) -- The Open Science Initiative for Perfusion Imaging (OSIPI): Results from the ASL MRI Challenge. [ISMRM 2022, abstract 0910](https://cds.ismrm.org/protected/22MProceedings/PDFfiles/0910.html) -- Paschoal AM, Woods JG, Pinto J, et al. Reproducibility of arterial spin labeling cerebral blood flow image processing: A report of the ISMRM open science initiative for perfusion imaging (OSIPI) and the ASL MRI challenge. Magn Reson Med. 2024; 92: 836-852. doi: [10.1002/mrm.30081](https://doi.org/10.1002/mrm.30081) +- [ISMRM - Open Science Initiative for Perfusion Imaging (OSIPI): The multi-delay Arterial Spin Labeling Challenge.](https://cds.ismrm.org/protected/24MProceedings/PDFfiles/4869_aHE9XdQeI.html) ISMRM 2024, abstract 4869 +- [The ASL Challenge Reproduction Study: Replicating Findings from The OSIPI-ISMRM ASL MRI Challenge.](https://cds.ismrm.org/protected/23MProceedings/PDFfiles/2576_5y45zUR7T.html) ISMRM 2023, abstract 0914 +- [The Open Science Initiative for Perfusion Imaging (OSIPI): Results from the ASL MRI Challenge.](https://cds.ismrm.org/protected/22MProceedings/PDFfiles/0910.html) ISMRM 2022, abstract 0910 +- [The Open Source Initiative for Perfusion Imaging (OSIPI) ASL MRI Challenge.](https://cds.ismrm.org/protected/21MProceedings/PDFfiles/2714.html) ISMRM 2021, abstract 2714 +- [Results of the OSIPI Challenges (ASL).](https://www.ismrm.org/workshops/2022/Perfusion/) ISMRM workshop on Perfusion MRI: from head tot toe. +- [Reproducibility of arterial spin labeling cerebral blood flow image processing: A report of the ISMRM open science initiative for perfusion imaging (OSIPI) and the ASL MRI challenge.](https://doi.org/10.1002/mrm.30081) Paschoal et al. Magn Reson Med. 2024;92(2):836-852. diff --git a/docs/tf/tf6-2.md b/docs/tf/tf6-2.md index 5d593fa8..e542ae8f 100644 --- a/docs/tf/tf6-2.md +++ b/docs/tf/tf6-2.md @@ -34,7 +34,8 @@ More details are available in the [two-year roadmap](https://docs.google.com/doc ## Publications -- The Open Source Initiative for Perfusion Imaging (OSIPI): DCE-MRI Challenge. [ISMRM 2021, abstract 1094](https://cds.ismrm.org/protected/21MProceedings/PDFfiles/1094.html) -- The Open Science Initiative for Perfusion Imaging (OSIPI): Early Results from the DCE-MRI Challenge. [ISMRM 2022, abstract 0047](https://cds.ismrm.org/protected/22MProceedings/PDFfiles/0047.html) -- Results of the OSIPI Challenges (ASL). [ISMRM workshop on Perfusion MRI: from head tot toe.](https://www.ismrm.org/workshops/2022/Perfusion/) -- Shalom ES, Kim H, van der Heijden RA, Ahmed Z, Patel R, Hormuth DA 2nd, DiCarlo JC, Yankeelov TE, Sisco NJ, Dortch RD, Stokes AM, Inglese M, Grech-Sollars M, Toschi N, Sahoo P, Singh A, Verma SK, Rathore DK, Kazerouni AS, Partridge SC, LoCastro E, Paudyal R, Wolansky IA, Shukla-Dave A, Schouten P, Gurney-Champion OJ, Jiřík R, Macíček O, Bartoš M, Vitouš J, Das AB, Kim SG, Bokacheva L, Mikheev A, Rusinek H, Berks M, Hubbard Cristinacce PL, Little RA, Cheung S, O'Connor JPB, Parker GJM, Moloney B, LaViolette PS, Bobholz S, Duenweg S, Virostko J, Laue HO, Sung K, Nabavizadeh A, Saligheh Rad H, Hu LS, Sourbron S, Bell LC, Fathi Kazerooni A. The ISMRM Open Science Initiative for Perfusion Imaging (OSIPI): Results from the OSIPI-Dynamic Contrast-Enhanced challenge. Magn Reson Med. 2023 Dec 19. doi: [10.1002/mrm.29909](https://doi.org/10.1002/mrm.29909). +- [The ISMRM Open Science Initiative for Perfusion Imaging (OSIPI): A Challenge for Reproducible DCE-MRI AI-based Analysis.](https://cds.ismrm.org/protected/24MProceedings/PDFfiles/0245_En1mDaR8b.html) ISMRM 2024, abstract 0245 +- [OSIPI-DCE Challenge: Preliminary Results.](https://www.ismrm.org/workshops/2022/Perfusion/) ISMRM workshop on Perfusion MRI: from head tot toe. +- [The Open Science Initiative for Perfusion Imaging (OSIPI): Early Results from the DCE-MRI Challenge.](https://cds.ismrm.org/protected/22MProceedings/PDFfiles/0047.html) ISMRM 2022, abstract 0047 +- [The Open Source Initiative for Perfusion Imaging (OSIPI): DCE-MRI Challenge.](https://cds.ismrm.org/protected/21MProceedings/PDFfiles/1094.html) ISMRM 2021, abstract 1094 +- [The ISMRM Open Science Initiative for Perfusion Imaging (OSIPI): Results from the OSIPI-Dynamic Contrast-Enhanced challenge.](https://doi.org/10.1002/mrm.29909) Shalom et al. Magn Reson Med. 2023 Dec 19. diff --git a/docs/tf/tf6-3.md b/docs/tf/tf6-3.md index f7646200..bf93208d 100644 --- a/docs/tf/tf6-3.md +++ b/docs/tf/tf6-3.md @@ -15,4 +15,4 @@ More info can be found in the [roadmap](https://docs.google.com/document/d/1w2Jl ## Publications -- Reproducibility of intravoxel incoherent motion imaging: impact of the fitting algorithm. [ISMRM 2026, abstract 668-03-013](http://echo.ismrm.org/p/ISMRM2026/668-03-013) +- [Reproducibility of intravoxel incoherent motion imaging: impact of the fitting algorithm.](http://echo.ismrm.org/p/ISMRM2026/668-03-013) ISMRM 2026, abstract 668-03-013