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@AllenNeuralDynamics

Allen Institute for Neural Dynamics

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  1. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 43 12

  2. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 34 21

  3. openscope-community-predictive-processing openscope-community-predictive-processing Public

    This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.

    Python 28 13

  4. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 14 3

  5. supervoxel-loss supervoxel-loss Public

    Efficient connectivity-preserving loss function for training neural networks to perform instance segmentation.

    Python 13 2

  6. ibl-ephys-alignment-gui ibl-ephys-alignment-gui Public

    Forked from int-brain-lab/iblapps

    Tool for aligning electrophysiological features to anatomical landmarks

    Python 12 5

Repositories

Showing 10 of 723 repositories
  • Aind.Behavior.VrForaging.Packaging Public

    A repository to package primary data from Aind.Behavior.VrForaging

    AllenNeuralDynamics/Aind.Behavior.VrForaging.Packaging's past year of commit activity
    Python 0 MIT 0 2 2 Updated Oct 26, 2026
  • AllenNeuralDynamics/standard_morph's past year of commit activity
    Python 2 0 3 1 Updated Oct 26, 2026
  • aind-data-schema-models Public

    Data models used in aind-data-schema

    AllenNeuralDynamics/aind-data-schema-models's past year of commit activity
    Python 0 MIT 5 1 0 Updated Oct 26, 2026
  • biodata-models Public

    Registries and controlled vocabularies used in biodata-schema

    AllenNeuralDynamics/biodata-models's past year of commit activity
    Python 0 MIT 0 9 1 Updated Oct 26, 2026
  • aind-dynamic-foraging-bfm-atlas Public

    Interactive, provenance-traced browser for aind-dynamic-foraging-bfm-studies reports

    AllenNeuralDynamics/aind-dynamic-foraging-bfm-atlas's past year of commit activity
    JavaScript 0 MIT 0 1 1 Updated Oct 26, 2026
  • GIAnT-MATLAB Public

    Glutamate Imaging Analysis Toolbox, MATLAB implementation

    AllenNeuralDynamics/GIAnT-MATLAB's past year of commit activity
    MATLAB 3 MIT 2 4 5 Updated Oct 26, 2026
  • aind-dynamic-foraging-bfm-studies Public

    Scientific studies of the dynamic-foraging-bfm stack: one folder per question, with launch records, frozen inputs, analysis and reports. Extracted with full history from aind-dynamic-foraging-bfm-dispatcher.

    AllenNeuralDynamics/aind-dynamic-foraging-bfm-studies's past year of commit activity
    Python 0 MIT 0 2 0 Updated Oct 26, 2026
  • Aind.Behavior.VrForaging Public

    Task implemention of VR Foraging experiment

    AllenNeuralDynamics/Aind.Behavior.VrForaging's past year of commit activity
    C# 3 MIT 0 6 1 Updated Oct 26, 2026
  • zombie Public
    AllenNeuralDynamics/zombie's past year of commit activity
    JavaScript 0 MIT 1 22 0 Updated Oct 26, 2026
  • zephyr Public

    A network to predict breathing signals from video

    AllenNeuralDynamics/zephyr's past year of commit activity
    Python 0 MIT 0 1 1 Updated Oct 26, 2026