[kelly-sovacool]

Changes

used for https://github.com/CCBR/ccbrpipeliner/issues/92

Example:

bash ./scripts/open-pipeline-issues.sh \
  -t "load apptainer instead of singularity" \
  -b "See https://github.com/CCBR/ccbrpipeliner/issues/92" \
  -l "refactor" -n

Issues

NA

PR Checklist

(Strikethrough any points that are not applicable.)

• This comment contains a description of changes with justifications, with any relevant issues linked.
• Write unit tests for any new features, bug fixes, or other code changes.
• Update docs if there are any API changes.
• Update CHANGELOG.md with a short description of any user-facing changes and reference the PR number. Guidelines: https://keepachangelog.com/en/1.1.0/

AI-assisted: Claude Opus 5.5 via Copilot

[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 73.42%. Comparing base (98e9d8f) to head (c1c1bd5).
⚠️ Report is 1 commits behind head on main.

Additional details and impacted files

@@           Coverage Diff           @@
##             main     #238   +/-   ##
=======================================
  Coverage   73.42%   73.42%           
=======================================
  Files          28       28           
  Lines        1938     1938           
=======================================
  Hits         1423     1423           
  Misses        515      515           

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[Copilot]

🟡 Changes recommended

Repeated missing labels cause label setup to fail and skip issue creation in affected repositories.

1 open issue

• Update cached labels after creation to prevent duplicate label errors · New

What changed in this PR

Adds a helper script to open matching GitHub issues across CCBR’s registered Snakemake and Nextflow pipeline repositories.

Changes:

• Supports issue text, repeatable labels, missing-label creation, and dry runs.
• Documents the script in the changelog.
• Removes two inline lint suppressions without changing Python runtime behavior.

File	Description
src/​ccbr_tools/​pipeline/​util.py	Removes a datetime lint suppression.
src/​ccbr_tools/​jobinfo.py	Removes a datetime parsing lint suppression.
scripts/​open-pipeline-issues.sh	Adds bulk pipeline issue creation.
CHANGELOG.md	Documents the new script.

_{Review effort: Balanced}