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Replace numeric placeholder descriptions on four diseases - #145

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KrishnaTO merged 3 commits into
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claude/numeric-placeholder-descriptions
Oct 15, 2026
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KrishnaTO merged 3 commits into
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claude/numeric-placeholder-descriptions

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@KrishnaTO

@KrishnaTO KrishnaTO commented Oct 15, 2026 •

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Four diseases had a bare number as their rdfs:comment description. Each is replaced with the Rose & McKay definition from Leon Islas's 2026-10-08 master list (ALPHABETICAL sheet), word for word, chapter and page included. The curator chose that column over the "Autoimmune Registry" one.

ARI Disease Was Master-list row
ARI:0001015 Anti-MAG neuropathy 0.5 21
ARI:0001022 Atypical hemolytic uremic syndrome with anti-factor H autoantibodies 0.2 29
ARI:0001024 Autoimmune cerebellar ataxia 1 33
ARI:0001133 Motor neuropathy with multiple conduction block 1.94 146 ("Multifocal motor neuropathy", matched through an ARI synonym in report 10)

Each disease gets an ARI_ChangeLog line recording the replaced value.

Where the numbers came from

They are exactly the Incidence/Prevalence column of ARI Master List V 2.1 - 2026-06-04.xlsx ("Leon Main" sheet; for example 0.5 and 1.94 are "per 100 thousand", 0.2 is "per 1 million"). The 2026-06-15 "Imported from ARI core reports" import read that column as the description. They were already in the ontology's first commit (0b3ccde), and that import's code is not in this repo, so there is no script here to fix.

notebook/master-list-comparison/import_gaps.py is not the cause: it only fills rdfs:comment when a disease has none, so it skipped these four, because each already had a number.

Not in this PR

python .github/scripts/validate_mappings.py --since main: 0 errors, 0 warnings.

🤖 Generated with Claude Code

KrishnaTO and others added 3 commits October 15, 2026 12:31
Anti-MAG neuropathy, aHUS with anti-factor H, autoimmune cerebellar
ataxia and motor neuropathy with multiple conduction block had their
master-list Incidence/Prevalence value (V 2.1, 2026-06-04) as their
rdfs:comment, from the 2026-06-15 core-reports import. Each now has the
Rose & McKay definition from the 2026-10-08 master list, as the curator
chose, with an ARI_ChangeLog line recording the replaced value.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
…older-descriptions

# Conflicts:
#	changelog.md
#	ontologies/ari_t1d.owl
@KrishnaTO
KrishnaTO merged commit d13ce28 into main Oct 15, 2026
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