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@MoseleyBioinformaticsLab

Moseley Bioinformatics and Systems Biology Lab

We develop and maintain a set of high-quality, well-documented, open source code repositories for general scientific re-use.
README.md

Overview

We are a computationally-based lab on the University of Kentucky campus in Lexington, Kentucky, USA.

Our website is https://moseleybioinformaticslab.org . Unfortunately due to all of the web crawling for generative AI training, it is sometimes slow to respond to HTTP access requests.

Most of our open-source research products are on this GitHub organizational account.

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  1. GOcats GOcats Public

    A tool for categorizing Gene Ontology into subgraphs of user-defined emergent concepts

    Python 7 2

  2. mwtab mwtab Public

    The mwtab package is a Python library that facilitates reading and writing files in mwTab format used by the Metabolomics Workbench for archival of Mass Spectrometry (MS) and Nuclear Magnetic Reson…

    Python 13 3

  3. ICIKendallTau ICIKendallTau Public

    Information-Content-Informed Kendall-tau in R

    R 6 1

  4. kegg_pull kegg_pull Public

    Package that facilitates pulling database entries from KEGG via its REST API

    Python 15 3

  5. mwFileStatusWebsite mwFileStatusWebsite Public

    Repository hosting the Metabolomics Workbench File Status Website. A Third party website containing file status and validation information for all publicly available MW analysis data files.

    HTML 5

  6. MESSES MESSES Public

    MESSES (Metadata from Experimental SpreadSheets Extraction System) is a Python package that facilitates the conversion of tabular data into other formats.

    Python

Repositories

Showing 10 of 51 repositories
  • LabSystemStatus Public

    Contains files describing the current status of lab computers and services.

    MoseleyBioinformaticsLab/LabSystemStatus's past year of commit activity
    HTML 0 0 0 0 Updated Oct 31, 2026
  • manuscript.metabolomicsQCQA Public

    manuscript doing qc-qa on metabolomics datasets

    MoseleyBioinformaticsLab/manuscript.metabolomicsQCQA's past year of commit activity
    HTML 0 0 10 0 Updated Oct 30, 2026
  • mwFileStatusWebsite Public

    Repository hosting the Metabolomics Workbench File Status Website. A Third party website containing file status and validation information for all publicly available MW analysis data files.

    MoseleyBioinformaticsLab/mwFileStatusWebsite's past year of commit activity
    HTML 5 BSD-3-Clause-Clear 0 0 0 Updated Oct 26, 2026
  • visualizationQualityControl Public

    Visualization methods for omics dataset quality control

    MoseleyBioinformaticsLab/visualizationQualityControl's past year of commit activity
    R 11 5 11 0 Updated Oct 16, 2026
  • recount3 Public

    Python package providing API and CLI access to recount3

    MoseleyBioinformaticsLab/recount3's past year of commit activity
    Python 3 0 0 0 Updated Oct 10, 2026
  • kegg_pull Public

    Package that facilitates pulling database entries from KEGG via its REST API

    MoseleyBioinformaticsLab/kegg_pull's past year of commit activity
    Python 15 3 4 0 Updated Aug 12, 2026
  • mwtab Public

    The mwtab package is a Python library that facilitates reading and writing files in mwTab format used by the Metabolomics Workbench for archival of Mass Spectrometry (MS) and Nuclear Magnetic Resonance (NMR) experimental data.

    MoseleyBioinformaticsLab/mwtab's past year of commit activity
    Python 13 BSD-3-Clause-Clear 3 2 0 Updated Jul 28, 2026
  • categoryCompare2 Public

    Enables Gene Ontology (and other feature annotation) enrichment calculations and comparisons between feature sets.

    MoseleyBioinformaticsLab/categoryCompare2's past year of commit activity
    R 2 1 20 0 Updated Jul 24, 2026
  • md_harmonize Public
    MoseleyBioinformaticsLab/md_harmonize's past year of commit activity
    Python 0 0 1 0 Updated Jul 24, 2026
  • rc3helpers Public

    Small R package for working with custom recount3 projects

    MoseleyBioinformaticsLab/rc3helpers's past year of commit activity
    R 0 0 0 0 Updated Jul 22, 2026
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