Issues

• How to change the format of output (.xls) to .bed?

  TheJacksonLaboratory/Picky#14 · Filter by author LinXialab opened on Jun 25, 2019

• Will Picky identify intragenic rearrangements?

  TheJacksonLaboratory/Picky#13 · Filter by author wolfgangrumpf opened on Apr 22, 2019

• sam2align missing in the zip and tar.gz files for download

  TheJacksonLaboratory/Picky#12 · Filter by author sonderkar opened on Jan 17, 2019

• Picky get fewer SV counts than sniffles when use minimap2 do the alignment

  TheJacksonLaboratory/Picky#11 · Filter by author PengJia6 opened on Nov 11, 2018

• output xls and vcf file

  TheJacksonLaboratory/Picky#10 · Filter by author tgong1 opened on Jul 26, 2018

• Feature request: write bam rather than sam

  TheJacksonLaboratory/Picky#7 · Filter by author wdecoster opened on Jun 12, 2018

• Bug: hg19.lastdb and hg19.seq.dict hardcoded in callSV.pm

  TheJacksonLaboratory/Picky#6 · Filter by author wdecoster opened on Jun 12, 2018

• Feature request: check return codes of LAST, validate input in bash script

  TheJacksonLaboratory/Picky#5 · Filter by author wdecoster opened on Jun 12, 2018

• Feature request: support compressed fastq input

  TheJacksonLaboratory/Picky#4 · Filter by author wdecoster opened on Jun 12, 2018

• Can't locate hashFastq.pm in @INC if using symlink

  TheJacksonLaboratory/Picky#3 · Filter by author wdecoster opened on Jun 12, 2018

• Any way to rank the output SVs?

  question
  TheJacksonLaboratory/Picky#2 · Filter by author cytham opened on May 19, 2018
  1

• bioconda recipe

  enhancement
  TheJacksonLaboratory/Picky#1 · Filter by author wdecoster opened on May 3, 2018
  2