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Barth lab

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  1. AlloCraft AlloCraft Public

    Allosteric design of proteins using allosteric pathways, stability calculations, and normal mode analysis

    MATLAB 12 1

  2. AlloDy AlloDy Public

    Analysis of molecular dynamics trajectories of proteins, with a focus on allosteric pathways and ensemble differences

    MATLAB 7 2

  3. CAPSens_design CAPSens_design Public

    Python 4

  4. SPaDES_DESIGNS SPaDES_DESIGNS Public

    Repo containing demo to recreate Ion Sampling and designs discussed in 2023 Rosetta SPaDES submission

    Python 4

  5. MDprot MDprot Public

    Forked from mahdiofhijaz/MDprot

    A set of Matlab functions to analyze protein structures and molecular dynamics (MD) simulations of proteins

    MATLAB 2

  6. QUESTS QUESTS Public

    Quaternary receptor state design for signaling selectivity

    Python 2

Repositories

Showing 10 of 10 repositories
  • AlloCraft Public

    Allosteric design of proteins using allosteric pathways, stability calculations, and normal mode analysis

    barth-lab/AlloCraft's past year of commit activity
    MATLAB 12 MPL-2.0 1 0 0 Updated Jan 11, 2026
  • AlloDy Public

    Analysis of molecular dynamics trajectories of proteins, with a focus on allosteric pathways and ensemble differences

    barth-lab/AlloDy's past year of commit activity
    MATLAB 7 MPL-2.0 2 0 0 Updated Dec 10, 2025
  • AlloPool Public
    barth-lab/AlloPool's past year of commit activity
    Python 2 0 2 0 Updated Sep 5, 2025
  • Dimeric_MultiDomain_Biosensor_Builder Public

    Assembly procotol to construct dimeric chimeras built from diverse structural native monomeric units, coupling orthgonal input/output signals.

    barth-lab/Dimeric_MultiDomain_Biosensor_Builder's past year of commit activity
    Roff 1 GPL-3.0 1 1 0 Updated Jun 27, 2025
  • SPaDES_DESIGNS Public

    Repo containing demo to recreate Ion Sampling and designs discussed in 2023 Rosetta SPaDES submission

    barth-lab/SPaDES_DESIGNS's past year of commit activity
    Python 4 0 0 0 Updated Jan 24, 2025
  • phenix_with_spades Public

    Demo to replicate results from submitted article on combining phenix with spades for improved structure refinement

    barth-lab/phenix_with_spades's past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Jan 24, 2025
  • MDprot Public Forked from mahdiofhijaz/MDprot

    A set of Matlab functions to analyze protein structures and molecular dynamics (MD) simulations of proteins

    barth-lab/MDprot's past year of commit activity
    MATLAB 2 MPL-2.0 3 0 0 Updated Jun 20, 2024
  • biophysics Public Forked from glis-glis/biophysics

    Library and tools for parsing and modifying biophysical files.

    barth-lab/biophysics's past year of commit activity
    D 1 MPL-2.0 1 0 0 Updated Jan 15, 2024
  • CAPSens_design Public
    barth-lab/CAPSens_design's past year of commit activity
    Python 4 0 0 0 Updated Mar 7, 2023
  • QUESTS Public

    Quaternary receptor state design for signaling selectivity

    barth-lab/QUESTS's past year of commit activity
    Python 2 0 0 0 Updated Oct 10, 2022

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