Issues

• Declared attachments are not available to a file-sourced architecture at import time

  bioimage-io/core-bioimage-io-python#503 · Filter by author nilsmechtel opened on Sep 13, 2026
  1

• Reproduce-check failures are hard to diagnose: the produced tensor is discarded, and the rtol/atol extremes reported are meaningless for integer label outputs

  bioimage-io/core-bioimage-io-python#502 · Filter by author Cyerme opened on Sep 3, 2026
  2

• Compatibility with .safetensors model weights

  bioimage-io/core-bioimage-io-python#497 · Filter by author GolpedeRemo37 opened on Jul 7, 2026
  1

• Create example notebook from presentation (notebook) "Create model from scratch"

  documentationgood first issuehelp wanted
  bioimage-io/core-bioimage-io-python#447 · Filter by author FynnBe opened on Dec 20, 2024

• ValueError when creating prediction pipeline with locally created model

  bioimage-io/core-bioimage-io-python#443 · Filter by author ElpadoCan opened on Dec 13, 2024
  3

• Minimal inference script with bioimage.io.core.prediction() fails

  bugenhancement
  bioimage-io/core-bioimage-io-python#441 · Filter by author qin-yu opened on Dec 11, 2024
  1

  

• Use pytest doctest to keep 'Get started' section up to date

  bioimage-io/core-bioimage-io-python#438 · Filter by author FynnBe opened on Nov 19, 2024
  1

  

• Improve example "create model" notebook or add another

  bioimage-io/core-bioimage-io-python#436 · Filter by author FynnBe opened on Nov 14, 2024

• Add testcase for blocking with optional inputs

  bioimage-io/core-bioimage-io-python#435 · Filter by author FynnBe opened on Nov 13, 2024
  1

• Improve handling of blocksize_parameter

  bioimage-io/core-bioimage-io-python#434 · Filter by author FynnBe opened on Nov 8, 2024
  2

  

• Model test failed (affable-shark's onnx weights)

  bioimage-io/core-bioimage-io-python#421 · Filter by author oeway opened on Sep 12, 2024
  2

• export models defined in code

  bioimage-io/core-bioimage-io-python#419 · Filter by author FynnBe opened on Aug 30, 2024

• New predict command: tiled prediction not working for model v0.4

  bioimage-io/core-bioimage-io-python#415 · Filter by author constantinpape opened on Aug 23, 2024
  3

  

• New predict command: how to pass input_block_shape?

  bioimage-io/core-bioimage-io-python#414 · Filter by author constantinpape opened on Aug 22, 2024
  3

  

• too much white space when displaying validation summary

  bioimage-io/core-bioimage-io-python#410 · Filter by author FynnBe opened on Aug 14, 2024

• How to run 'powerful-fish' on my image?

  enhancement
  bioimage-io/core-bioimage-io-python#405 · Filter by author tibuch opened on Jul 22, 2024
  2

• How to apply a model from Python

  bioimage-io/core-bioimage-io-python#391 · Filter by author haesleinhuepf opened on May 23, 2024
  6

  

• Plans for weight converter? Common interface.

  bioimage-io/core-bioimage-io-python#383 · Filter by author constantinpape opened on Apr 29, 2024
  2

• Pytorch Lightning model adaptor

  good first issue
  bioimage-io/core-bioimage-io-python#380 · Filter by author jdeschamps opened on Apr 26, 2024

• add block overlap and block stitching of overlapping blocks with masks/averaging

  bioimage-io/core-bioimage-io-python#373 · Filter by author FynnBe opened on Apr 3, 2024

• Improve weights conversion to ONNX

  good first issue
  bioimage-io/core-bioimage-io-python#362 · Filter by author FynnBe opened on Nov 15, 2023
  1

• Loading model resource gives assertion error

  bioimage-io/core-bioimage-io-python#355 · Filter by author jhennies opened on Oct 27, 2023
  2

• Add/improve weight converters

  good first issue
  bioimage-io/core-bioimage-io-python#354 · Filter by author FynnBe opened on Oct 25, 2023

• Investigate integration of aicsimageio

  bioimage-io/core-bioimage-io-python#353 · Filter by author FynnBe opened on Oct 25, 2023

• developer documentation

  documentation
  bioimage-io/core-bioimage-io-python#352 · Filter by author FynnBe opened on Oct 13, 2023
  1