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@cbg-ethz

Computational Biology Group (CBG)

Beerenwinkel Lab at ETH Zurich

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  1. V-pipe V-pipe Public

    V-pipe is a pipeline designed for analysing NGS data of short viral genomes

    Jupyter Notebook 147 46

Repositories

Showing 10 of 120 repositories
  • WisePulse Public

    WISE Loculus with V-Pipe – Infra for start-to-end viral wastewater analysis.

    cbg-ethz/WisePulse's past year of commit activity
    Rust 5 MIT 0 36 2 Updated Oct 8, 2026
  • sr2silo Public

    Wrangling short-read sequencing data for import into SILO

    cbg-ethz/sr2silo's past year of commit activity
    Python 1 MIT 2 8 9 Updated Oct 6, 2026
  • RSV-wastewater-V-pipe Public

    Wastewater-derived Respiratory Syncytial Virus data analysis

    cbg-ethz/RSV-wastewater-V-pipe's past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Oct 5, 2026
  • RSV-wastewater-2024-2025 Public

    Computational analysis of wastewater-derived Respiratory Syncytial Virus (RSV) data collected during the 2024–2025 season in Switzerland.

    cbg-ethz/RSV-wastewater-2024-2025's past year of commit activity
    Jupyter Notebook 0 Apache-2.0 0 0 0 Updated Oct 5, 2026
  • cowwid Public

    Procedure used for the surveillance of SARS-CoV-2, RSV and Influenza genomic variants in wastewater.

    cbg-ethz/cowwid's past year of commit activity
    Jupyter Notebook 7 0 3 3 Updated Oct 1, 2026
  • pangolin Public

    BSSE COVID-19 sequencing of test swab samples

    cbg-ethz/pangolin's past year of commit activity
    Shell 7 3 0 1 Updated Oct 1, 2026
  • SC-Bulk-Domain-Adaptation Public
    cbg-ethz/SC-Bulk-Domain-Adaptation's past year of commit activity
    Python 2 MIT 0 0 0 Updated Sep 29, 2026
  • scClone2DR Public

    scClone2DR project

    cbg-ethz/scClone2DR's past year of commit activity
    Jupyter Notebook 1 BSD-3-Clause 0 0 0 Updated Sep 27, 2026
  • MTBP_Numerics Public
    cbg-ethz/MTBP_Numerics's past year of commit activity
    C++ 0 MIT 0 0 0 Updated Sep 7, 2026
  • scReliability_paper Public
    cbg-ethz/scReliability_paper's past year of commit activity
    Python 4 MIT 0 0 0 Updated Sep 7, 2026
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