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Convert: generic HDF5 matrix and delimited text files #25
Done in #64 (text tables, as read_csv / read_text read them) and #65 (one dataset of a plain HDF5 file, as read_hdf), released in 0.13.0. Both stream: two passes of line blocks for text, slabs of chunks for HDF5; X is CSR by default (--dense keeps it dense), integers stay integers. Checked against anndata's readers in CI and on GEO GSE75748. Excel, .soft.gz and the other readers stay in #31.
Activity
adata convertto and from h5ad/zarr #20Merge pull request #64 from cellgeni/feat/convert-text-tables
Merge pull request #65 from cellgeni/feat/convert-hdf5
Claptar commentedon Oct 20, 2026
Done in #64 (text tables, as
read_csv/read_textread them) and #65 (one dataset of a plain HDF5 file, asread_hdf), released in 0.13.0. Both stream: two passes of line blocks for text, slabs of chunks for HDF5; X is CSR by default (--densekeeps it dense), integers stay integers. Checked against anndata's readers in CI and on GEO GSE75748. Excel,.soft.gzand the other readers stay in #31.