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convert: write SCope looms with --scope (#61) - #70

Merged

Claptar merged 10 commits into

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feat/scope-export

Oct 22, 2026

Merged

convert: write SCope looms with --scope (#61)#70
Claptar merged 10 commits into
mainfrom
feat/scope-export

Commits on Oct 22, 2026
- convert: write SCope looms with --scope (#61)
  
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  4642e2a
- convert --scope: one field per regulon, ClusterID from the clustering, bounded annotation scan
  
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  fe33021
- convert --scope: renumber marker fields, keep new clusterings' markers, bound category scan
  
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  dab5156
- convert to loom: one owner per attribute name; markers of undescribed clusters
  
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  24a1b36
- convert --scope: thresholds from the table as edited, marker metrics from the tables written
  
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  f29dc92
- convert --scope: clusterings once, markers pruned after name clashes, anndata 0.7 categoricals
  
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  3f4b477
- convert --scope: settle attribute names before planning; strict JSON; bounded legacy categories
  
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  b68045a
- convert --scope: marker metrics from the tables left after renumbering
  
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  78287f0
- convert --scope: clusterings claim no attribute name; markers need their base table
  
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  7ef1d08
- convert --scope: obsm tables claim their names; embeddings and clusterings checked against HDF5's limit in the plan
  
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  a733bef