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@fmi-basel

Friedrich Miescher Institute for Biomedical Research

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  1. latent-predictive-learning latent-predictive-learning Public

    Code to accompany our paper "The combination of Hebbian and predictive plasticity learns invariant object representations in deep sensory networks"

    Jupyter Notebook 34 7

  2. stork stork Public

    A differentiable spiking neural network simulator

    Python 26 5

  3. LSTree LSTree Public

    LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.

    Python 22

  4. neural-decoding-RSNN neural-decoding-RSNN Public

    Recurrent spiking neural networks (RSNNs) for decoding of motor signals from cortical spike trains

    Python 15 5

  5. neural-tangent-transfer neural-tangent-transfer Public

    Code accompanying our paper "Finding trainable sparse networks through Neural Tangent Transfer" to be published at ICML-2020.

    Jupyter Notebook 13 8

  6. Mantis-plex Mantis-plex Public

    Feature extraction and linking of multiplexing data.

    Python 13 1

Repositories

Showing 10 of 109 repositories
  • Mantis-plex Public

    Feature extraction and linking of multiplexing data.

    fmi-basel/Mantis-plex's past year of commit activity
    Python 13 BSD-3-Clause 1 23 0 Updated Oct 13, 2026
  • faim-jetraw Public
    fmi-basel/faim-jetraw's past year of commit activity
    Python 0 Apache-2.0 0 3 1 Updated Oct 12, 2026
  • fmi-basel/recurrent-predictive-learning's past year of commit activity
    Jupyter Notebook 5 MIT 0 0 0 Updated Oct 12, 2026
  • ATMC_Analysis Public
    fmi-basel/ATMC_Analysis's past year of commit activity
    Python 1 MIT 0 0 0 Updated Oct 12, 2026
  • fmi-basel/commute-time-preserving-world-models's past year of commit activity
    Python 2 MIT 0 1 0 Updated Oct 6, 2026
  • faim-robocopy Public

    A python-based UI for robocopy

    fmi-basel/faim-robocopy's past year of commit activity
    Python 3 MIT 0 6 1 Updated Oct 5, 2026
  • fmi-basel/balance-controlled-plasticity's past year of commit activity
    Jupyter Notebook 5 MIT 0 0 0 Updated Oct 5, 2026
  • identifiable-stochastic-nuisance Public

    Code for reproducing results from "Predictive Self-Supervised Learning Provably Identifies Stochastic Signals under Nuisance"

    fmi-basel/identifiable-stochastic-nuisance's past year of commit activity
    Jupyter Notebook 6 1 0 0 Updated Oct 2, 2026
  • sam_trainer Public

    A small package for augmenting images and training micro-sam models

    fmi-basel/sam_trainer's past year of commit activity
    Python 0 0 0 0 Updated Sep 28, 2026
  • gfelsenb-anytrack Public

    Pipeline to track individual objects in videos with static backgrounds

    fmi-basel/gfelsenb-anytrack's past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 3, 2026

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