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docs: an Applications-in-practice section - #63
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… a real pipeline Appends a worked real-world case to README.adoc: the concrete situation in an amplicon-sequencing pipeline in production use where the type, the OND discipline or the algebra earns its keep -- and what the untyped or undisciplined alternative gets wrong. Documentation only; no code changes. Generated by Mistral Vibe. Co-Authored-By: Mistral Vibe <vibe@mistral.ai>
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The title clearly identifies the documentation change: adding an Applications-in-practice section. It is concise and directly related to the main change. |
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The description accurately explains the new README.adoc section and confirms that the pull request contains documentation-only changes. |
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Review comments at @README.adoc:
- Around line 311-312: Add a link from the MetaManifold PERMANOVA integration
reference in the worked case text to the concrete integration example,
preserving the surrounding explanation.
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The section named MetaManifold's PERMANOVA integration without a link. It now points at the theorems where they live, pinned: the fork's proofs/agda/MetaManifold/Permanova.agda at 7d5e9a4, the upstream proposal PR #55, and the Julia oracle test_permanova.jl -- so a reader can check the floor lemma and its oracle from the sentence that cites them. Generated by Mistral Vibe. Co-Authored-By: Mistral Vibe <vibe@mistral.ai>
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What this adds
An Applications in practice section in
README.adoc: one worked real-world case that shows the honest near-zero language around permutation p-value floors -- 'essentially impossible' checked before it reaches a figure -- grounded in MetaManifold, an amplicon-sequencing pipeline in production use, because the value of the discipline is clearest on a live pipeline rather than a toy.The section answers the question a newcomer actually has: what is this for in the real world, and what goes wrong without it? It is deliberately short, states what the undisciplined alternative gets wrong, and links the concrete case.
What this leaves out
Documentation only. No code, no API, no claim changes anywhere else in the repo. The commit is signed.
Versions tested
Not applicable -- documentation.
Generated by Mistral Vibe.
Co-Authored-By: Mistral Vibe vibe@mistral.ai